Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC36.81■■■■□ 3.48
SHROOM4Q9ULL8 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC36.81■■■■□ 3.48
SHROOM4Q9ULL8 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC36.81■■■■□ 3.48
SHROOM4Q9ULL8 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC36.81■■■■□ 3.48
SHROOM4Q9ULL8 PRSS44-201ENST00000515154 1146 ntBASIC36.81■■■■□ 3.48
SHROOM4Q9ULL8 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC36.81■■■■□ 3.48
SHROOM4Q9ULL8 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC36.81■■■■□ 3.48
SHROOM4Q9ULL8 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC36.8■■■■□ 3.48
SHROOM4Q9ULL8 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC36.8■■■■□ 3.48
SHROOM4Q9ULL8 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC36.8■■■■□ 3.48
SHROOM4Q9ULL8 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC36.8■■■■□ 3.48
SHROOM4Q9ULL8 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC36.8■■■■□ 3.48
SHROOM4Q9ULL8 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC36.8■■■■□ 3.48
SHROOM4Q9ULL8 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC36.8■■■■□ 3.48
SHROOM4Q9ULL8 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC36.8■■■■□ 3.48
SHROOM4Q9ULL8 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC36.8■■■■□ 3.48
SHROOM4Q9ULL8 KLK8-205ENST00000593490 267 ntTSL 3 BASIC36.8■■■■□ 3.48
SHROOM4Q9ULL8 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC36.8■■■■□ 3.48
SHROOM4Q9ULL8 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC36.79■■■■□ 3.48
SHROOM4Q9ULL8 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC36.79■■■■□ 3.48
SHROOM4Q9ULL8 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC36.79■■■■□ 3.48
SHROOM4Q9ULL8 FAAHP1-202ENST00000446499 1238 ntBASIC36.79■■■■□ 3.48
SHROOM4Q9ULL8 ETFA-216ENST00000560726 942 ntTSL 3 BASIC36.79■■■■□ 3.48
SHROOM4Q9ULL8 RN7SL510P-201ENST00000581311 263 ntBASIC36.79■■■■□ 3.48
SHROOM4Q9ULL8 GPALPP1-207ENST00000611650 899 ntBASIC36.79■■■■□ 3.48
SHROOM4Q9ULL8 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC36.79■■■■□ 3.48
SHROOM4Q9ULL8 HYMAI.1-201ENST00000620949 238 ntBASIC36.79■■■■□ 3.48
SHROOM4Q9ULL8 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC36.79■■■■□ 3.48
SHROOM4Q9ULL8 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC36.78■■■■□ 3.48
SHROOM4Q9ULL8 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC36.78■■■■□ 3.48
SHROOM4Q9ULL8 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC36.78■■■■□ 3.48
SHROOM4Q9ULL8 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC36.78■■■■□ 3.48
SHROOM4Q9ULL8 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC36.78■■■■□ 3.48
SHROOM4Q9ULL8 LY6E-213ENST00000522528 606 ntTSL 3 BASIC36.78■■■■□ 3.48
SHROOM4Q9ULL8 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC36.78■■■■□ 3.48
SHROOM4Q9ULL8 AL353719.1-201ENST00000566847 864 ntBASIC36.78■■■■□ 3.48
SHROOM4Q9ULL8 EFS-203ENST00000429593 2610 ntTSL 2 BASIC36.78■■■■□ 3.48
SHROOM4Q9ULL8 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC36.78■■■■□ 3.48
SHROOM4Q9ULL8 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC36.78■■■■□ 3.48
SHROOM4Q9ULL8 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC36.78■■■■□ 3.48
SHROOM4Q9ULL8 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC36.77■■■■□ 3.48
SHROOM4Q9ULL8 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC36.77■■■■□ 3.48
SHROOM4Q9ULL8 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC36.77■■■■□ 3.48
SHROOM4Q9ULL8 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC36.77■■■■□ 3.48
SHROOM4Q9ULL8 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC36.77■■■■□ 3.48
SHROOM4Q9ULL8 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC36.77■■■■□ 3.48
SHROOM4Q9ULL8 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC36.77■■■■□ 3.48
SHROOM4Q9ULL8 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC36.77■■■■□ 3.48
SHROOM4Q9ULL8 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC36.77■■■■□ 3.48
SHROOM4Q9ULL8 AL157384.1-201ENST00000445995 2473 ntBASIC36.77■■■■□ 3.48
SHROOM4Q9ULL8 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC36.77■■■■□ 3.48
SHROOM4Q9ULL8 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC36.77■■■■□ 3.48
SHROOM4Q9ULL8 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC36.76■■■■□ 3.48
SHROOM4Q9ULL8 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC36.76■■■■□ 3.48
SHROOM4Q9ULL8 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC36.76■■■■□ 3.48
SHROOM4Q9ULL8 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC36.76■■■■□ 3.48
SHROOM4Q9ULL8 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC36.76■■■■□ 3.48
SHROOM4Q9ULL8 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC36.76■■■■□ 3.48
SHROOM4Q9ULL8 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC36.76■■■■□ 3.47
SHROOM4Q9ULL8 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC36.76■■■■□ 3.47
SHROOM4Q9ULL8 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC36.76■■■■□ 3.47
SHROOM4Q9ULL8 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC36.76■■■■□ 3.47
SHROOM4Q9ULL8 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC36.76■■■■□ 3.47
SHROOM4Q9ULL8 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 PRR29-207ENST00000580752 458 ntTSL 3 BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 KRT8P45-201ENST00000414328 1447 ntBASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 AL162377.1-201ENST00000618844 1793 ntBASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 Z85996.1-201ENST00000494644 937 ntBASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 GLRB-205ENST00000512619 728 ntTSL 3 BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC36.75■■■■□ 3.47
SHROOM4Q9ULL8 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC36.74■■■■□ 3.47
SHROOM4Q9ULL8 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC36.74■■■■□ 3.47
SHROOM4Q9ULL8 CD37-204ENST00000535669 1674 ntTSL 2 BASIC36.74■■■■□ 3.47
SHROOM4Q9ULL8 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC36.74■■■■□ 3.47
SHROOM4Q9ULL8 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC36.74■■■■□ 3.47
SHROOM4Q9ULL8 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC36.74■■■■□ 3.47
SHROOM4Q9ULL8 AP000523.1-201ENST00000398242 1049 ntBASIC36.74■■■■□ 3.47
SHROOM4Q9ULL8 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC36.74■■■■□ 3.47
SHROOM4Q9ULL8 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC36.74■■■■□ 3.47
SHROOM4Q9ULL8 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC36.74■■■■□ 3.47
SHROOM4Q9ULL8 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC36.73■■■■□ 3.47
SHROOM4Q9ULL8 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC36.73■■■■□ 3.47
SHROOM4Q9ULL8 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC36.73■■■■□ 3.47
SHROOM4Q9ULL8 AC112907.2-201ENST00000448639 330 ntBASIC36.73■■■■□ 3.47
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms