Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS28Q9UK41 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
VPS28Q9UK41 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS28Q9UK41 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
VPS28Q9UK41 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 BX323043.1-201ENST00000641006 1765 ntBASIC19.9■□□□□ 0.78
VPS28Q9UK41 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS28Q9UK41 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS28Q9UK41 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS28Q9UK41 NME1-207ENST00000480143 964 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 NUDT16P1-203ENST00000513809 620 ntBASIC19.9■□□□□ 0.78
VPS28Q9UK41 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS28Q9UK41 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 HLA-A-209ENST00000638375 975 ntBASIC19.9■□□□□ 0.78
VPS28Q9UK41 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS28Q9UK41 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS28Q9UK41 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
VPS28Q9UK41 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VPS28Q9UK41 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
VPS28Q9UK41 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.89■□□□□ 0.78
VPS28Q9UK41 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
VPS28Q9UK41 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.78
VPS28Q9UK41 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS28Q9UK41 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS28Q9UK41 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS28Q9UK41 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS28Q9UK41 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS28Q9UK41 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS28Q9UK41 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS28Q9UK41 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS28Q9UK41 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS28Q9UK41 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS28Q9UK41 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS28Q9UK41 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS28Q9UK41 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.89■□□□□ 0.77
VPS28Q9UK41 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VPS28Q9UK41 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS28Q9UK41 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.89■□□□□ 0.77
VPS28Q9UK41 AL031985.4-201ENST00000642138 673 ntBASIC19.89■□□□□ 0.77
VPS28Q9UK41 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.89■□□□□ 0.77
VPS28Q9UK41 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.88■□□□□ 0.77
VPS28Q9UK41 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS28Q9UK41 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS28Q9UK41 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS28Q9UK41 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS28Q9UK41 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.88■□□□□ 0.77
VPS28Q9UK41 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS28Q9UK41 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.88■□□□□ 0.77
VPS28Q9UK41 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.88■□□□□ 0.77
VPS28Q9UK41 AC131212.4-201ENST00000623606 975 ntBASIC19.88■□□□□ 0.77
VPS28Q9UK41 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
VPS28Q9UK41 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VPS28Q9UK41 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
VPS28Q9UK41 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
VPS28Q9UK41 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS28Q9UK41 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
VPS28Q9UK41 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.87■□□□□ 0.77
VPS28Q9UK41 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS28Q9UK41 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
VPS28Q9UK41 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS28Q9UK41 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS28Q9UK41 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.87■□□□□ 0.77
VPS28Q9UK41 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS28Q9UK41 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
VPS28Q9UK41 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
VPS28Q9UK41 AL355075.4-201ENST00000554988 638 ntBASIC19.87■□□□□ 0.77
VPS28Q9UK41 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.87■□□□□ 0.77
VPS28Q9UK41 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS28Q9UK41 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VPS28Q9UK41 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS28Q9UK41 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VPS28Q9UK41 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
VPS28Q9UK41 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS28Q9UK41 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS28Q9UK41 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS28Q9UK41 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS28Q9UK41 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS28Q9UK41 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS28Q9UK41 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS28Q9UK41 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.86■□□□□ 0.77
VPS28Q9UK41 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS28Q9UK41 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS28Q9UK41 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.86■□□□□ 0.77
VPS28Q9UK41 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS28Q9UK41 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VPS28Q9UK41 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.86■□□□□ 0.77
VPS28Q9UK41 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.86■□□□□ 0.77
VPS28Q9UK41 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS28Q9UK41 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms