Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.17■□□□□ 0.98
HIPK3Q9H422 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HIPK3Q9H422 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HIPK3Q9H422 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HIPK3Q9H422 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC21.17■□□□□ 0.98
HIPK3Q9H422 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HIPK3Q9H422 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.17■□□□□ 0.98
HIPK3Q9H422 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.17■□□□□ 0.98
HIPK3Q9H422 IRF5-214ENST00000613821 595 ntTSL 5 BASIC21.17■□□□□ 0.98
HIPK3Q9H422 BCL10-202ENST00000620248 774 ntTSL 5 BASIC21.17■□□□□ 0.98
HIPK3Q9H422 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC21.17■□□□□ 0.98
HIPK3Q9H422 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HIPK3Q9H422 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.17■□□□□ 0.98
HIPK3Q9H422 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.17■□□□□ 0.98
HIPK3Q9H422 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
HIPK3Q9H422 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.17■□□□□ 0.98
HIPK3Q9H422 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
HIPK3Q9H422 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.16■□□□□ 0.98
HIPK3Q9H422 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.16■□□□□ 0.98
HIPK3Q9H422 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
HIPK3Q9H422 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.16■□□□□ 0.98
HIPK3Q9H422 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
HIPK3Q9H422 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
HIPK3Q9H422 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.16■□□□□ 0.98
HIPK3Q9H422 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HIPK3Q9H422 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.16■□□□□ 0.98
HIPK3Q9H422 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.16■□□□□ 0.98
HIPK3Q9H422 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.16■□□□□ 0.98
HIPK3Q9H422 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.16■□□□□ 0.98
HIPK3Q9H422 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
HIPK3Q9H422 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HIPK3Q9H422 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HIPK3Q9H422 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC21.15■□□□□ 0.98
HIPK3Q9H422 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HIPK3Q9H422 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HIPK3Q9H422 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
HIPK3Q9H422 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HIPK3Q9H422 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HIPK3Q9H422 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
HIPK3Q9H422 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HIPK3Q9H422 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HIPK3Q9H422 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HIPK3Q9H422 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC21.15■□□□□ 0.98
HIPK3Q9H422 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HIPK3Q9H422 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
HIPK3Q9H422 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HIPK3Q9H422 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HIPK3Q9H422 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.15■□□□□ 0.98
HIPK3Q9H422 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
HIPK3Q9H422 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.15■□□□□ 0.98
HIPK3Q9H422 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HIPK3Q9H422 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
HIPK3Q9H422 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.14■□□□□ 0.97
HIPK3Q9H422 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.14■□□□□ 0.97
HIPK3Q9H422 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.14■□□□□ 0.97
HIPK3Q9H422 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HIPK3Q9H422 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.14■□□□□ 0.97
HIPK3Q9H422 SPDYE15P-201ENST00000424157 909 ntBASIC21.14■□□□□ 0.97
HIPK3Q9H422 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.14■□□□□ 0.97
HIPK3Q9H422 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
HIPK3Q9H422 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.14■□□□□ 0.97
HIPK3Q9H422 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.14■□□□□ 0.97
HIPK3Q9H422 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HIPK3Q9H422 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HIPK3Q9H422 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.14■□□□□ 0.97
HIPK3Q9H422 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
HIPK3Q9H422 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.14■□□□□ 0.97
HIPK3Q9H422 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.14■□□□□ 0.97
HIPK3Q9H422 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.13■□□□□ 0.97
HIPK3Q9H422 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HIPK3Q9H422 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
HIPK3Q9H422 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HIPK3Q9H422 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC21.13■□□□□ 0.97
HIPK3Q9H422 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HIPK3Q9H422 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HIPK3Q9H422 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HIPK3Q9H422 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC21.13■□□□□ 0.97
HIPK3Q9H422 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.13■□□□□ 0.97
HIPK3Q9H422 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC21.13■□□□□ 0.97
HIPK3Q9H422 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.13■□□□□ 0.97
HIPK3Q9H422 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HIPK3Q9H422 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HIPK3Q9H422 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HIPK3Q9H422 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HIPK3Q9H422 KRT8P11-201ENST00000409686 1436 ntBASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms