Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 MIR3180-1-201ENST00000580374 94 ntBASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 MIR3180-3-201ENST00000584616 94 ntBASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 GPALPP1-207ENST00000611650 899 ntBASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
SHANK3Q9BYB0 AC020907.5-201ENST00000624372 1936 ntBASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 DET1-207ENST00000564406 2315 ntTSL 2 BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 GOLGA2P11-201ENST00000562660 1621 ntBASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 NDUFV2-AS1-203ENST00000608008 779 ntBASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC25.12■■□□□ 1.61
SHANK3Q9BYB0 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 AP000347.1-202ENST00000435868 847 ntBASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 IRF5-214ENST00000613821 595 ntTSL 5 BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 BCL10-202ENST00000620248 774 ntTSL 5 BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC25.11■■□□□ 1.61
SHANK3Q9BYB0 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
SHANK3Q9BYB0 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC25.1■■□□□ 1.61
SHANK3Q9BYB0 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC25.1■■□□□ 1.61
SHANK3Q9BYB0 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC25.1■■□□□ 1.61
SHANK3Q9BYB0 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC25.1■■□□□ 1.61
SHANK3Q9BYB0 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
SHANK3Q9BYB0 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC25.1■■□□□ 1.61
SHANK3Q9BYB0 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SHANK3Q9BYB0 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
SHANK3Q9BYB0 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SHANK3Q9BYB0 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SHANK3Q9BYB0 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC25.1■■□□□ 1.61
SHANK3Q9BYB0 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
SHANK3Q9BYB0 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 AC009237.14-201ENST00000609975 1594 ntBASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 PRR29-207ENST00000580752 458 ntTSL 3 BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 AL512408.1-201ENST00000569378 2000 ntBASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC25.09■■□□□ 1.61
SHANK3Q9BYB0 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SHANK3Q9BYB0 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
SHANK3Q9BYB0 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC25.08■■□□□ 1.61
SHANK3Q9BYB0 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
SHANK3Q9BYB0 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
SHANK3Q9BYB0 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC25.08■■□□□ 1.61
SHANK3Q9BYB0 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC25.08■■□□□ 1.61
SHANK3Q9BYB0 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms