Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC13.88□□□□□ -0.19
COL7A1Q02388 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL7A1Q02388 AC093525.10-201ENST00000625130 1569 ntBASIC13.87□□□□□ -0.19
COL7A1Q02388 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL7A1Q02388 AC004870.1-201ENST00000315132 882 ntBASIC13.87□□□□□ -0.19
COL7A1Q02388 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC13.87□□□□□ -0.19
COL7A1Q02388 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC13.87□□□□□ -0.19
COL7A1Q02388 AC011498.5-201ENST00000592027 486 ntBASIC13.87□□□□□ -0.19
COL7A1Q02388 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL7A1Q02388 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL7A1Q02388 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL7A1Q02388 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC13.87□□□□□ -0.19
COL7A1Q02388 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
COL7A1Q02388 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC13.87□□□□□ -0.19
COL7A1Q02388 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL7A1Q02388 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
COL7A1Q02388 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC13.87□□□□□ -0.19
COL7A1Q02388 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC13.87□□□□□ -0.19
COL7A1Q02388 TSPY19P-201ENST00000418461 509 ntBASIC13.87□□□□□ -0.19
COL7A1Q02388 TSPY18P-201ENST00000441642 509 ntBASIC13.87□□□□□ -0.19
COL7A1Q02388 TK1-205ENST00000590862 642 ntTSL 3 BASIC13.87□□□□□ -0.19
COL7A1Q02388 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC13.87□□□□□ -0.19
COL7A1Q02388 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
COL7A1Q02388 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 PHGDH-210ENST00000641115 1638 ntBASIC13.87□□□□□ -0.19
COL7A1Q02388 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC13.87□□□□□ -0.19
COL7A1Q02388 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC13.87□□□□□ -0.19
COL7A1Q02388 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC13.87□□□□□ -0.19
COL7A1Q02388 AF228730.7-201ENST00000641842 219 ntBASIC13.87□□□□□ -0.19
COL7A1Q02388 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
COL7A1Q02388 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL7A1Q02388 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC13.86□□□□□ -0.19
COL7A1Q02388 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL7A1Q02388 AC036111.1-201ENST00000533973 1582 ntBASIC13.86□□□□□ -0.19
COL7A1Q02388 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL7A1Q02388 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL7A1Q02388 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL7A1Q02388 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC13.86□□□□□ -0.19
COL7A1Q02388 VPS51-217ENST00000639871 243 ntTSL 5 BASIC13.86□□□□□ -0.19
COL7A1Q02388 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL7A1Q02388 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL7A1Q02388 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC13.86□□□□□ -0.19
COL7A1Q02388 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
COL7A1Q02388 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC13.86□□□□□ -0.19
COL7A1Q02388 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
COL7A1Q02388 FEM1AP4-201ENST00000443167 1987 ntBASIC13.86□□□□□ -0.19
COL7A1Q02388 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC13.86□□□□□ -0.19
COL7A1Q02388 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC13.86□□□□□ -0.19
COL7A1Q02388 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL7A1Q02388 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC13.86□□□□□ -0.19
COL7A1Q02388 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
COL7A1Q02388 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC13.86□□□□□ -0.19
COL7A1Q02388 AC034232.1-201ENST00000506026 1064 ntBASIC13.86□□□□□ -0.19
COL7A1Q02388 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC13.86□□□□□ -0.19
COL7A1Q02388 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC13.86□□□□□ -0.19
COL7A1Q02388 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC13.86□□□□□ -0.19
COL7A1Q02388 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
COL7A1Q02388 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC13.86□□□□□ -0.19
COL7A1Q02388 AL121672.3-201ENST00000608644 468 ntBASIC13.86□□□□□ -0.19
COL7A1Q02388 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC13.86□□□□□ -0.19
COL7A1Q02388 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC13.86□□□□□ -0.19
COL7A1Q02388 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
COL7A1Q02388 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
COL7A1Q02388 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC13.86□□□□□ -0.19
COL7A1Q02388 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC13.86□□□□□ -0.19
COL7A1Q02388 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC13.85□□□□□ -0.19
COL7A1Q02388 AC022898.2-201ENST00000616822 1312 ntBASIC13.85□□□□□ -0.19
COL7A1Q02388 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL7A1Q02388 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC13.85□□□□□ -0.19
COL7A1Q02388 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL7A1Q02388 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL7A1Q02388 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
COL7A1Q02388 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC13.85□□□□□ -0.19
COL7A1Q02388 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC13.85□□□□□ -0.19
COL7A1Q02388 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
COL7A1Q02388 RASA4DP-201ENST00000460726 1199 ntBASIC13.85□□□□□ -0.19
COL7A1Q02388 BET1L-206ENST00000486280 665 ntTSL 3 BASIC13.85□□□□□ -0.19
COL7A1Q02388 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
COL7A1Q02388 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC13.85□□□□□ -0.19
COL7A1Q02388 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC13.85□□□□□ -0.19
COL7A1Q02388 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC13.85□□□□□ -0.19
COL7A1Q02388 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms