Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CIITAP33076 Z82202.1-201ENST00000623446 1880 ntBASIC21.83■■□□□ 1.09
CIITAP33076 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.83■■□□□ 1.09
CIITAP33076 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.83■■□□□ 1.09
CIITAP33076 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.83■■□□□ 1.09
CIITAP33076 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
CIITAP33076 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
CIITAP33076 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
CIITAP33076 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CIITAP33076 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.83■■□□□ 1.09
CIITAP33076 FITM1-202ENST00000559294 800 ntBASIC21.83■■□□□ 1.09
CIITAP33076 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.83■■□□□ 1.09
CIITAP33076 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
CIITAP33076 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.83■■□□□ 1.09
CIITAP33076 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CIITAP33076 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CIITAP33076 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CIITAP33076 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
CIITAP33076 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CIITAP33076 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC21.83■■□□□ 1.08
CIITAP33076 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
CIITAP33076 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
CIITAP33076 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CIITAP33076 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CIITAP33076 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CIITAP33076 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CIITAP33076 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.82■■□□□ 1.08
CIITAP33076 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CIITAP33076 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.82■■□□□ 1.08
CIITAP33076 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.82■■□□□ 1.08
CIITAP33076 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CIITAP33076 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.82■■□□□ 1.08
CIITAP33076 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CIITAP33076 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
CIITAP33076 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CIITAP33076 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CIITAP33076 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.82■■□□□ 1.08
CIITAP33076 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CIITAP33076 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CIITAP33076 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.81■■□□□ 1.08
CIITAP33076 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.81■■□□□ 1.08
CIITAP33076 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.81■■□□□ 1.08
CIITAP33076 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.81■■□□□ 1.08
CIITAP33076 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CIITAP33076 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
CIITAP33076 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CIITAP33076 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CIITAP33076 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.81■■□□□ 1.08
CIITAP33076 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
CIITAP33076 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
CIITAP33076 FAM207BP-201ENST00000447172 505 ntBASIC21.81■■□□□ 1.08
CIITAP33076 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.81■■□□□ 1.08
CIITAP33076 AP005242.2-201ENST00000580065 1175 ntBASIC21.81■■□□□ 1.08
CIITAP33076 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.81■■□□□ 1.08
CIITAP33076 AP000525.1-201ENST00000608286 694 ntBASIC21.81■■□□□ 1.08
CIITAP33076 AC073912.3-201ENST00000624414 853 ntBASIC21.81■■□□□ 1.08
CIITAP33076 AC096733.2-201ENST00000609937 1394 ntBASIC21.81■■□□□ 1.08
CIITAP33076 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CIITAP33076 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.81■■□□□ 1.08
CIITAP33076 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.81■■□□□ 1.08
CIITAP33076 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.81■■□□□ 1.08
CIITAP33076 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CIITAP33076 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.81■■□□□ 1.08
CIITAP33076 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CIITAP33076 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.8■■□□□ 1.08
CIITAP33076 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.8■■□□□ 1.08
CIITAP33076 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.8■■□□□ 1.08
CIITAP33076 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.8■■□□□ 1.08
CIITAP33076 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CIITAP33076 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC21.8■■□□□ 1.08
CIITAP33076 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CIITAP33076 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CIITAP33076 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CIITAP33076 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CIITAP33076 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.79■■□□□ 1.08
CIITAP33076 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CIITAP33076 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CIITAP33076 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CIITAP33076 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CIITAP33076 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CIITAP33076 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
CIITAP33076 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CIITAP33076 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC21.79■■□□□ 1.08
CIITAP33076 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms