Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
COL6A3P12111 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A3P12111 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A3P12111 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.28■□□□□ 0.84
COL6A3P12111 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
COL6A3P12111 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL6A3P12111 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC20.28■□□□□ 0.84
COL6A3P12111 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.28■□□□□ 0.84
COL6A3P12111 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.28■□□□□ 0.84
COL6A3P12111 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL6A3P12111 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.27■□□□□ 0.84
COL6A3P12111 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL6A3P12111 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.27■□□□□ 0.84
COL6A3P12111 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC20.27■□□□□ 0.84
COL6A3P12111 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.27■□□□□ 0.84
COL6A3P12111 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
COL6A3P12111 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL6A3P12111 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.27■□□□□ 0.84
COL6A3P12111 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL6A3P12111 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.27■□□□□ 0.84
COL6A3P12111 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
COL6A3P12111 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A3P12111 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
COL6A3P12111 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A3P12111 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC20.26■□□□□ 0.83
COL6A3P12111 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A3P12111 MIR1199-201ENST00000621445 119 ntBASIC20.26■□□□□ 0.83
COL6A3P12111 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A3P12111 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A3P12111 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A3P12111 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC20.26■□□□□ 0.83
COL6A3P12111 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC20.26■□□□□ 0.83
COL6A3P12111 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A3P12111 AC112482.1-201ENST00000492080 688 ntBASIC20.26■□□□□ 0.83
COL6A3P12111 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC20.26■□□□□ 0.83
COL6A3P12111 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
COL6A3P12111 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL6A3P12111 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A3P12111 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.26■□□□□ 0.83
COL6A3P12111 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A3P12111 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL6A3P12111 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A3P12111 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A3P12111 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A3P12111 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A3P12111 METTL21AP1-201ENST00000438852 635 ntBASIC20.25■□□□□ 0.83
COL6A3P12111 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.25■□□□□ 0.83
COL6A3P12111 AC083906.6-201ENST00000641366 219 ntBASIC20.25■□□□□ 0.83
COL6A3P12111 AC079781.4-201ENST00000641908 219 ntBASIC20.25■□□□□ 0.83
COL6A3P12111 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.25■□□□□ 0.83
COL6A3P12111 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
COL6A3P12111 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A3P12111 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A3P12111 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A3P12111 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.25■□□□□ 0.83
COL6A3P12111 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL6A3P12111 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC20.25■□□□□ 0.83
COL6A3P12111 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC20.25■□□□□ 0.83
COL6A3P12111 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.25■□□□□ 0.83
COL6A3P12111 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
COL6A3P12111 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.25■□□□□ 0.83
COL6A3P12111 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A3P12111 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A3P12111 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.24■□□□□ 0.83
COL6A3P12111 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.24■□□□□ 0.83
COL6A3P12111 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.24■□□□□ 0.83
COL6A3P12111 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.24■□□□□ 0.83
COL6A3P12111 ORC5-208ENST00000626700 344 ntTSL 3 BASIC20.24■□□□□ 0.83
COL6A3P12111 KRT8P41-201ENST00000533985 1514 ntBASIC20.24■□□□□ 0.83
COL6A3P12111 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.24■□□□□ 0.83
COL6A3P12111 AC018553.1-201ENST00000616682 1458 ntBASIC20.24■□□□□ 0.83
COL6A3P12111 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.24■□□□□ 0.83
COL6A3P12111 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
COL6A3P12111 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A3P12111 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A3P12111 YBX2P1-201ENST00000394192 760 ntBASIC20.24■□□□□ 0.83
COL6A3P12111 AC074051.2-201ENST00000565115 352 ntBASIC20.24■□□□□ 0.83
COL6A3P12111 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC20.24■□□□□ 0.83
COL6A3P12111 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL6A3P12111 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A3P12111 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A3P12111 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A3P12111 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.23■□□□□ 0.83
COL6A3P12111 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.23■□□□□ 0.83
COL6A3P12111 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.23■□□□□ 0.83
COL6A3P12111 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A3P12111 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A3P12111 AL049840.3-201ENST00000602669 611 ntBASIC20.23■□□□□ 0.83
COL6A3P12111 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A3P12111 KLK8-202ENST00000320838 456 ntTSL 5 BASIC20.23■□□□□ 0.83
COL6A3P12111 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.23■□□□□ 0.83
COL6A3P12111 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A3P12111 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC20.23■□□□□ 0.83
COL6A3P12111 AC233702.3-201ENST00000578656 1387 ntBASIC20.23■□□□□ 0.83
COL6A3P12111 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A3P12111 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.23■□□□□ 0.83
COL6A3P12111 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL6A3P12111 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
COL6A3P12111 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL6A3P12111 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms