Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTN3O95197 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
RTN3O95197 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
RTN3O95197 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RTN3O95197 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTN3O95197 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTN3O95197 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTN3O95197 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
RTN3O95197 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RTN3O95197 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RTN3O95197 AL160286.2-201ENST00000567150 934 ntBASIC20.38■□□□□ 0.85
RTN3O95197 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.38■□□□□ 0.85
RTN3O95197 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.38■□□□□ 0.85
RTN3O95197 LINC01023-201ENST00000606054 436 ntBASIC20.38■□□□□ 0.85
RTN3O95197 AP000525.1-201ENST00000608286 694 ntBASIC20.38■□□□□ 0.85
RTN3O95197 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTN3O95197 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTN3O95197 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTN3O95197 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RTN3O95197 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.38■□□□□ 0.85
RTN3O95197 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTN3O95197 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.37■□□□□ 0.85
RTN3O95197 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
RTN3O95197 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.37■□□□□ 0.85
RTN3O95197 AC011506.1-201ENST00000474329 610 ntBASIC20.37■□□□□ 0.85
RTN3O95197 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
RTN3O95197 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.37■□□□□ 0.85
RTN3O95197 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.37■□□□□ 0.85
RTN3O95197 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.37■□□□□ 0.85
RTN3O95197 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.37■□□□□ 0.85
RTN3O95197 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.37■□□□□ 0.85
RTN3O95197 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.37■□□□□ 0.85
RTN3O95197 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.37■□□□□ 0.85
RTN3O95197 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.37■□□□□ 0.85
RTN3O95197 RCC2P6-201ENST00000526625 1557 ntBASIC20.37■□□□□ 0.85
RTN3O95197 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
RTN3O95197 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.37■□□□□ 0.85
RTN3O95197 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTN3O95197 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RTN3O95197 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.36■□□□□ 0.85
RTN3O95197 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RTN3O95197 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.36■□□□□ 0.85
RTN3O95197 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.36■□□□□ 0.85
RTN3O95197 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RTN3O95197 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
RTN3O95197 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.36■□□□□ 0.85
RTN3O95197 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RTN3O95197 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RTN3O95197 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.36■□□□□ 0.85
RTN3O95197 AC004951.3-201ENST00000418645 1148 ntBASIC20.36■□□□□ 0.85
RTN3O95197 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.36■□□□□ 0.85
RTN3O95197 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.36■□□□□ 0.85
RTN3O95197 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.36■□□□□ 0.85
RTN3O95197 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RTN3O95197 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.36■□□□□ 0.85
RTN3O95197 FITM1-202ENST00000559294 800 ntBASIC20.36■□□□□ 0.85
RTN3O95197 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.36■□□□□ 0.85
RTN3O95197 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.36■□□□□ 0.85
RTN3O95197 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.36■□□□□ 0.85
RTN3O95197 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.36■□□□□ 0.85
RTN3O95197 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RTN3O95197 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RTN3O95197 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
RTN3O95197 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RTN3O95197 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RTN3O95197 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RTN3O95197 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RTN3O95197 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RTN3O95197 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.36■□□□□ 0.85
RTN3O95197 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.36■□□□□ 0.85
RTN3O95197 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTN3O95197 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
RTN3O95197 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.35■□□□□ 0.85
RTN3O95197 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RTN3O95197 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTN3O95197 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RTN3O95197 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTN3O95197 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTN3O95197 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTN3O95197 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
RTN3O95197 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTN3O95197 MIR1238-201ENST00000408483 83 ntBASIC20.35■□□□□ 0.85
RTN3O95197 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RTN3O95197 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.35■□□□□ 0.85
RTN3O95197 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.35■□□□□ 0.85
RTN3O95197 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms