Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.63■□□□□ 0.89
SOX1O00570 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.63■□□□□ 0.89
SOX1O00570 AC242852.2-201ENST00000615738 1807 ntBASIC20.63■□□□□ 0.89
SOX1O00570 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX1O00570 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX1O00570 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.63■□□□□ 0.89
SOX1O00570 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.63■□□□□ 0.89
SOX1O00570 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX1O00570 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.63■□□□□ 0.89
SOX1O00570 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SOX1O00570 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.63■□□□□ 0.89
SOX1O00570 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SOX1O00570 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX1O00570 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.63■□□□□ 0.89
SOX1O00570 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.63■□□□□ 0.89
SOX1O00570 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX1O00570 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SOX1O00570 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX1O00570 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SOX1O00570 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX1O00570 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.62■□□□□ 0.89
SOX1O00570 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX1O00570 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SOX1O00570 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX1O00570 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX1O00570 UPF3AP3-201ENST00000420996 769 ntBASIC20.62■□□□□ 0.89
SOX1O00570 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.62■□□□□ 0.89
SOX1O00570 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
SOX1O00570 AC009065.1-201ENST00000564055 1225 ntBASIC20.62■□□□□ 0.89
SOX1O00570 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.62■□□□□ 0.89
SOX1O00570 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC20.62■□□□□ 0.89
SOX1O00570 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SOX1O00570 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC20.62■□□□□ 0.89
SOX1O00570 LINC01465-201ENST00000408887 1940 ntBASIC20.62■□□□□ 0.89
SOX1O00570 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX1O00570 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SOX1O00570 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
SOX1O00570 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.62■□□□□ 0.89
SOX1O00570 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX1O00570 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SOX1O00570 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.61■□□□□ 0.89
SOX1O00570 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.61■□□□□ 0.89
SOX1O00570 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX1O00570 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SOX1O00570 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX1O00570 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SOX1O00570 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX1O00570 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX1O00570 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.61■□□□□ 0.89
SOX1O00570 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC20.61■□□□□ 0.89
SOX1O00570 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SOX1O00570 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.61■□□□□ 0.89
SOX1O00570 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.61■□□□□ 0.89
SOX1O00570 AC010327.4-202ENST00000591484 748 ntBASIC20.61■□□□□ 0.89
SOX1O00570 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SOX1O00570 ECEL1P1-201ENST00000373592 1742 ntBASIC20.61■□□□□ 0.89
SOX1O00570 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SOX1O00570 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
SOX1O00570 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
SOX1O00570 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SOX1O00570 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX1O00570 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX1O00570 KRT8P41-201ENST00000533985 1514 ntBASIC20.6■□□□□ 0.89
SOX1O00570 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX1O00570 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX1O00570 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.6■□□□□ 0.89
SOX1O00570 HTR5BP-201ENST00000430851 1154 ntBASIC20.6■□□□□ 0.89
SOX1O00570 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.6■□□□□ 0.89
SOX1O00570 AC024243.1-201ENST00000609234 778 ntBASIC20.6■□□□□ 0.89
SOX1O00570 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX1O00570 AC112497.1-201ENST00000624824 639 ntBASIC20.6■□□□□ 0.89
SOX1O00570 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX1O00570 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX1O00570 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX1O00570 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.6■□□□□ 0.89
SOX1O00570 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC20.6■□□□□ 0.89
SOX1O00570 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SOX1O00570 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SOX1O00570 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX1O00570 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX1O00570 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.59■□□□□ 0.89
SOX1O00570 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC20.59■□□□□ 0.89
SOX1O00570 AL117328.2-201ENST00000624617 1940 ntBASIC20.59■□□□□ 0.89
SOX1O00570 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.59■□□□□ 0.89
SOX1O00570 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX1O00570 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.59■□□□□ 0.89
SOX1O00570 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX1O00570 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SOX1O00570 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.59■□□□□ 0.89
SOX1O00570 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.59■□□□□ 0.89
SOX1O00570 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SOX1O00570 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
SOX1O00570 KRT18P67-201ENST00000432816 1264 ntBASIC20.59■□□□□ 0.89
SOX1O00570 HLA-F-220ENST00000434407 884 ntBASIC20.59■□□□□ 0.89
SOX1O00570 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.59■□□□□ 0.89
SOX1O00570 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SOX1O00570 AL049840.3-201ENST00000602669 611 ntBASIC20.59■□□□□ 0.89
SOX1O00570 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SOX1O00570 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SOX1O00570 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms