Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC010329.2-201ENST00000595195 2737 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 HMGB1P5-201ENST00000255320 642 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 RN7SKP104-201ENST00000362605 328 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 U3.3-201ENST00000362986 216 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 RN7SKP149-201ENST00000363008 344 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 RNU1-32P-201ENST00000363937 159 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 MIR600-201ENST00000385007 98 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 U3.32-201ENST00000408116 212 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 RNA5SP80-201ENST00000410475 111 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 RNU2-50P-201ENST00000410494 143 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 TRGV6-201ENST00000417928 299 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC004074.1-201ENST00000421810 1063 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 BX119904.4-201ENST00000424402 301 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 PRPF38AP2-201ENST00000438179 851 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 UBE2V1P5-201ENST00000440070 405 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 MTCYBP3-201ENST00000445588 1137 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC015724.1-201ENST00000478577 156 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 RN7SL459P-201ENST00000481078 302 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 RN7SL809P-201ENST00000482040 297 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 NIP7P2-201ENST00000485801 544 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 RPS27P23-201ENST00000487608 251 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 RPF2P2-201ENST00000504693 896 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 WBP1LP4-201ENST00000505043 344 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC073358.1-201ENST00000505671 684 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC079395.1-201ENST00000510981 262 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 GTF2F2P1-201ENST00000511083 675 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC116353.3-201ENST00000511215 249 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC010285.3-201ENST00000511668 676 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 RNA5SP360-201ENST00000516555 118 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC105185.1-201ENST00000518705 535 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC008562.1-201ENST00000521763 330 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 NDUFB4P11-201ENST00000560510 395 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC090751.1-201ENST00000566966 267 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AL451074.6-201ENST00000608512 729 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC022106.2-201ENST00000620114 757 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC096656.1-201ENST00000623826 1364 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC092079.1-201ENST00000558620 1985 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 OR51H2P-202ENST00000641424 3046 ntBASIC4.85□□□□□ -1.63
VPS4AQ9UN37 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS4AQ9UN37 AC010300.1-201ENST00000600671 5134 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AP000526.1-201ENST00000603308 1388 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 FAM3C2-201ENST00000312214 681 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 OR56B2P-201ENST00000317102 954 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 RN7SKP113-201ENST00000363891 295 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 NRBF2P2-201ENST00000413087 861 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC019050.1-201ENST00000418508 492 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 GTF2IP23-201ENST00000423746 351 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC008072.1-201ENST00000434254 824 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AL117351.1-201ENST00000438864 766 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 RSL24D1P3-201ENST00000449255 495 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC073387.1-201ENST00000453261 709 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 RPL10P17-201ENST00000453852 316 ntBASIC4.84□□□□□ -1.63
VPS4AQ9UN37 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS4AQ9UN37 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms