Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RPL29P14-201ENST00000495837 428 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 AC006499.6-201ENST00000511169 607 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 IFITM8P-201ENST00000522529 394 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 AL136520.1-202ENST00000555494 763 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 AC079171.1-201ENST00000568788 914 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 MIR3160-1-201ENST00000577972 85 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 AC012417.1-201ENST00000582307 1039 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 AC092653.1-201ENST00000608509 531 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 AC112484.5-201ENST00000624189 228 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 AC097372.4-201ENST00000625025 466 ntBASIC4.13□□□□□ -1.75
LHX3Q9UBR4 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
LHX3Q9UBR4 Z82217.1-201ENST00000625157 8149 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 MARK2P15-201ENST00000432204 2186 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 SNORA60-201ENST00000362396 134 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 RNA5SP479-201ENST00000364858 117 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AC019155.1-201ENST00000382242 574 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 PTGES3P2-201ENST00000407942 482 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 OR5BE1P-201ENST00000425977 939 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 HSFY6P-201ENST00000445573 403 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AC078857.1-201ENST00000469870 667 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AC010683.1-201ENST00000473673 378 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AC025554.1-201ENST00000505641 188 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AC108064.1-201ENST00000513791 460 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 SNORA26.10-201ENST00000516427 141 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AC006946.3-201ENST00000609791 756 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AP003072.4-201ENST00000624580 310 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 OR5BE1P-202ENST00000641168 1176 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 MTCO1P18-201ENST00000455518 1419 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 MFSD8-220ENST00000641243 1422 ntBASIC4.12□□□□□ -1.75
LHX3Q9UBR4 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
LHX3Q9UBR4 HSPA8P19-201ENST00000505359 1517 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 CASC19-261ENST00000641853 1638 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 SNORD35B-201ENST00000363660 87 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 RNU6-609P-201ENST00000365459 107 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 MIR1303-201ENST00000408625 86 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 RNU4-27P-201ENST00000410889 139 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AL158825.1-201ENST00000414735 521 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 GTF2IP2-201ENST00000424290 697 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AL117339.2-201ENST00000430475 180 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AC092447.2-201ENST00000435487 669 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 TBCAP1-201ENST00000436520 327 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 CYCSP53-201ENST00000455540 265 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 RPL23AP2-201ENST00000471227 466 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AL132838.2-201ENST00000492041 314 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AC084757.1-201ENST00000559987 490 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AC106785.3-201ENST00000564064 847 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AC025627.2-201ENST00000576220 160 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.11□□□□□ -1.75
LHX3Q9UBR4 AL451044.1-201ENST00000604867 238 ntBASIC4.11□□□□□ -1.75
LHX3Q9UBR4 RPL21P136-201ENST00000605378 396 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms