Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MTND1P24-201ENST00000552175 861 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 AL137072.1-201ENST00000603444 466 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 AL160237.3-201ENST00000604114 1013 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 AL078595.3-201ENST00000623815 1166 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
USP41Q3LFD5 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
USP41Q3LFD5 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
USP41Q3LFD5 AC005332.5-201ENST00000591222 2919 ntBASIC4.75□□□□□ -1.65
USP41Q3LFD5 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP41Q3LFD5 AL121657.1-201ENST00000327215 531 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 Y_RNA.126-201ENST00000363382 111 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 RNU1-83P-201ENST00000363426 164 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 RNA5SP515-201ENST00000364570 118 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 MIR525-201ENST00000384978 85 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 AL590290.1-201ENST00000405336 380 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 FCF1P5-201ENST00000406490 482 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 SNORA11F-201ENST00000408237 128 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 TAF13P2-201ENST00000416876 286 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 OR2X1P-201ENST00000421144 687 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
USP41Q3LFD5 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
USP41Q3LFD5 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP41Q3LFD5 CBX1P4-201ENST00000439415 457 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 RPS26P30-201ENST00000443431 335 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AL592437.1-201ENST00000443781 492 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC005002.1-201ENST00000447458 540 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AL050341.1-201ENST00000447743 313 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC114755.5-201ENST00000447760 831 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AL031313.1-201ENST00000448435 256 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AL354710.1-201ENST00000453641 246 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 RPL7P19-201ENST00000469948 618 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC020898.1-201ENST00000474167 787 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 RNA5SP497-201ENST00000516081 97 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 MIR2116-201ENST00000517221 80 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 HMGB1P23-201ENST00000518743 568 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC087897.1-201ENST00000550134 156 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC025884.1-201ENST00000556034 378 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC068714.1-201ENST00000559623 800 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC015912.2-201ENST00000571053 181 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP41Q3LFD5 RPP40P2-201ENST00000603596 712 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC112220.2-201ENST00000605513 533 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC063944.3-201ENST00000609969 533 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC139769.3-201ENST00000618383 175 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 AP002967.1-201ENST00000624203 539 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC008993.2-201ENST00000631744 806 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC005261.4-201ENST00000600047 1385 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
USP41Q3LFD5 AC009313.2-201ENST00000417893 1941 ntBASIC4.74□□□□□ -1.65
USP41Q3LFD5 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
USP41Q3LFD5 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.74□□□□□ -1.65
USP41Q3LFD5 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
USP41Q3LFD5 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.73□□□□□ -1.65
USP41Q3LFD5 AC107027.3-201ENST00000565095 3473 ntBASIC4.73□□□□□ -1.65
USP41Q3LFD5 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
USP41Q3LFD5 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.73□□□□□ -1.65
USP41Q3LFD5 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
USP41Q3LFD5 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
USP41Q3LFD5 MIR331-201ENST00000362302 94 ntBASIC4.73□□□□□ -1.65
USP41Q3LFD5 RNU1-132P-201ENST00000364300 164 ntBASIC4.73□□□□□ -1.65
USP41Q3LFD5 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
USP41Q3LFD5 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
USP41Q3LFD5 MIR195-201ENST00000385194 87 ntBASIC4.73□□□□□ -1.65
USP41Q3LFD5 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.73□□□□□ -1.65
USP41Q3LFD5 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.73□□□□□ -1.65
USP41Q3LFD5 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.73□□□□□ -1.65
USP41Q3LFD5 RPS24P8-201ENST00000431490 402 ntBASIC4.73□□□□□ -1.65
USP41Q3LFD5 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
USP41Q3LFD5 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms