Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC6.14□□□□□ -1.43
SOX4Q06945 AC011816.2-201ENST00000607089 556 ntBASIC6.14□□□□□ -1.43
SOX4Q06945 AC079684.1-201ENST00000621405 437 ntBASIC6.14□□□□□ -1.43
SOX4Q06945 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.43
SOX4Q06945 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SOX4Q06945 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SOX4Q06945 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SOX4Q06945 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SOX4Q06945 AC010928.1-201ENST00000592477 1447 ntBASIC6.14□□□□□ -1.43
SOX4Q06945 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SOX4Q06945 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SOX4Q06945 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
SOX4Q06945 AC130360.2-201ENST00000533477 1556 ntBASIC6.14□□□□□ -1.43
SOX4Q06945 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
SOX4Q06945 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
SOX4Q06945 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC6.14□□□□□ -1.43
SOX4Q06945 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC6.14□□□□□ -1.43
SOX4Q06945 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX4Q06945 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX4Q06945 ZNF33BP1-201ENST00000452497 1834 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX4Q06945 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX4Q06945 CA1-225ENST00000626824 2405 ntTSL 5 BASIC6.13□□□□□ -1.43
SOX4Q06945 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX4Q06945 RNY3P3-201ENST00000363816 102 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 RN7SKP124-201ENST00000364730 341 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 MIR143-201ENST00000385300 106 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 OR3A2-201ENST00000408891 1076 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 AL359704.1-201ENST00000411586 781 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 AL136133.1-201ENST00000413694 376 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX4Q06945 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX4Q06945 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX4Q06945 EIF4A1P7-201ENST00000421800 1220 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 AC018644.1-201ENST00000429934 551 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 GTF2IP20-201ENST00000431663 360 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.13□□□□□ -1.43
SOX4Q06945 ACTR3P2-201ENST00000439585 1257 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC6.13□□□□□ -1.43
SOX4Q06945 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX4Q06945 Z82190.1-201ENST00000454534 490 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 AC021205.1-201ENST00000468797 348 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX4Q06945 MTND1P3-201ENST00000484956 952 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX4Q06945 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX4Q06945 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX4Q06945 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC6.13□□□□□ -1.43
SOX4Q06945 AC074255.1-201ENST00000511259 501 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 SCARNA21.2-201ENST00000516600 166 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX4Q06945 AP000790.1-201ENST00000528891 737 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX4Q06945 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX4Q06945 AC027026.1-201ENST00000532323 742 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC6.13□□□□□ -1.43
SOX4Q06945 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC6.13□□□□□ -1.43
SOX4Q06945 AC126615.2-201ENST00000553003 515 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 NMNAT1P1-201ENST00000554095 876 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX4Q06945 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX4Q06945 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC6.13□□□□□ -1.43
SOX4Q06945 AC018638.8-201ENST00000588755 281 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 AC022916.3-201ENST00000592961 742 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 AC090525.3-201ENST00000605601 189 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC6.13□□□□□ -1.43
SOX4Q06945 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
SOX4Q06945 AC008121.3-201ENST00000618726 433 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 UBA3-213ENST00000631029 123 ntTSL 5 BASIC6.13□□□□□ -1.43
SOX4Q06945 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SOX4Q06945 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC6.13□□□□□ -1.43
SOX4Q06945 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
SOX4Q06945 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.13□□□□□ -1.43
SOX4Q06945 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX4Q06945 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
SOX4Q06945 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SOX4Q06945 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
SOX4Q06945 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
SOX4Q06945 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC6.13□□□□□ -1.43
SOX4Q06945 AC006378.2-201ENST00000623178 2476 ntBASIC6.13□□□□□ -1.43
SOX4Q06945 LINC00561-201ENST00000565815 2738 ntBASIC6.12□□□□□ -1.43
SOX4Q06945 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
SOX4Q06945 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SOX4Q06945 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SOX4Q06945 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC6.12□□□□□ -1.43
SOX4Q06945 SNORD1C-201ENST00000363315 78 ntBASIC6.12□□□□□ -1.43
SOX4Q06945 RN7SKP160-201ENST00000363804 340 ntBASIC6.12□□□□□ -1.43
SOX4Q06945 RNU4-7P-201ENST00000364758 141 ntBASIC6.12□□□□□ -1.43
SOX4Q06945 AC104297.1-201ENST00000393779 870 ntBASIC6.12□□□□□ -1.43
SOX4Q06945 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SOX4Q06945 AL390316.1-201ENST00000406279 553 ntBASIC6.12□□□□□ -1.43
SOX4Q06945 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC6.12□□□□□ -1.43
SOX4Q06945 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC6.12□□□□□ -1.43
SOX4Q06945 BX510359.3-201ENST00000422168 306 ntBASIC6.12□□□□□ -1.43
SOX4Q06945 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC6.12□□□□□ -1.43
SOX4Q06945 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC6.12□□□□□ -1.43
SOX4Q06945 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC6.12□□□□□ -1.43
SOX4Q06945 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC6.12□□□□□ -1.43
SOX4Q06945 AC132479.1-201ENST00000449160 144 ntBASIC6.12□□□□□ -1.43
SOX4Q06945 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms