Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
BRCA1P38398 RALGAPA1P1-201ENST00000443361 6232 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
BRCA1P38398 AC092111.2-201ENST00000611627 1414 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
BRCA1P38398 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
BRCA1P38398 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC4.47□□□□□ -1.69
BRCA1P38398 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
BRCA1P38398 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
BRCA1P38398 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.47□□□□□ -1.69
BRCA1P38398 AC083843.3-201ENST00000623679 2186 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
BRCA1P38398 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.47□□□□□ -1.69
BRCA1P38398 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
BRCA1P38398 ANKRD36P1-201ENST00000344424 659 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 AL589994.1-201ENST00000404962 340 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 AL445213.1-201ENST00000412589 747 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC4.47□□□□□ -1.69
BRCA1P38398 AC108941.1-201ENST00000502853 530 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.47□□□□□ -1.69
BRCA1P38398 AC233702.9-201ENST00000581528 203 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 CKS1BP3-201ENST00000600888 237 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 AL606834.2-201ENST00000602954 668 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 AC026979.4-201ENST00000606555 645 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 AL773545.4-201ENST00000637262 310 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 AL513478.4-201ENST00000641636 310 ntBASIC4.47□□□□□ -1.69
BRCA1P38398 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
BRCA1P38398 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.47□□□□□ -1.69
BRCA1P38398 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.47□□□□□ -1.69
BRCA1P38398 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
BRCA1P38398 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
BRCA1P38398 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
BRCA1P38398 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
BRCA1P38398 SNORA38.1-201ENST00000364172 131 ntBASIC4.46□□□□□ -1.7
BRCA1P38398 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.46□□□□□ -1.7
BRCA1P38398 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.46□□□□□ -1.7
BRCA1P38398 RPS15AP29-201ENST00000445539 400 ntBASIC4.46□□□□□ -1.7
BRCA1P38398 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.46□□□□□ -1.7
BRCA1P38398 AC008694.2-201ENST00000517591 306 ntBASIC4.46□□□□□ -1.7
BRCA1P38398 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.46□□□□□ -1.7
BRCA1P38398 AC025423.2-201ENST00000537570 439 ntBASIC4.46□□□□□ -1.7
BRCA1P38398 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.46□□□□□ -1.7
BRCA1P38398 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC4.46□□□□□ -1.7
BRCA1P38398 AL589935.2-201ENST00000616471 1231 ntBASIC4.46□□□□□ -1.7
BRCA1P38398 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.46□□□□□ -1.7
BRCA1P38398 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
BRCA1P38398 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
BRCA1P38398 NACA3P-201ENST00000359690 648 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 AL357075.1-201ENST00000404107 726 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 LIPT1P1-201ENST00000415870 1186 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 GEMIN8P3-201ENST00000445417 720 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 AC239798.3-201ENST00000454459 408 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 AP002371.1-201ENST00000463604 433 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 AC020893.1-201ENST00000502452 580 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 KATNBL1P4-201ENST00000503545 918 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 STMN1P2-201ENST00000508435 439 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
BRCA1P38398 RPL21P7-201ENST00000557463 483 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 AC006504.3-201ENST00000586818 523 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 AC138932.5-201ENST00000617759 563 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 AC069209.1-201ENST00000619282 651 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC4.45□□□□□ -1.7
BRCA1P38398 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
BRCA1P38398 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.45□□□□□ -1.7
BRCA1P38398 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
BRCA1P38398 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.45□□□□□ -1.7
BRCA1P38398 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
BRCA1P38398 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
BRCA1P38398 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.45□□□□□ -1.7
BRCA1P38398 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC4.45□□□□□ -1.7
BRCA1P38398 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
BRCA1P38398 AL121839.2-201ENST00000565058 6943 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
BRCA1P38398 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
BRCA1P38398 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.45□□□□□ -1.7
BRCA1P38398 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
BRCA1P38398 RNA5SP306-201ENST00000411087 107 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 UBE2V1P1-201ENST00000430836 445 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC4.45□□□□□ -1.7
BRCA1P38398 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.45□□□□□ -1.7
BRCA1P38398 RPS27AP1-201ENST00000475545 471 ntBASIC4.45□□□□□ -1.7
BRCA1P38398 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.45□□□□□ -1.7
BRCA1P38398 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
BRCA1P38398 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.45□□□□□ -1.7
BRCA1P38398 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
BRCA1P38398 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
BRCA1P38398 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
BRCA1P38398 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
BRCA1P38398 MAPK10-303ENST00000641324 3959 ntBASIC4.44□□□□□ -1.7
BRCA1P38398 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.44□□□□□ -1.7
BRCA1P38398 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
BRCA1P38398 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC4.44□□□□□ -1.7
BRCA1P38398 RPL7P28-201ENST00000437739 740 ntBASIC4.44□□□□□ -1.7
BRCA1P38398 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.44□□□□□ -1.7
BRCA1P38398 PSMC1P13-201ENST00000458195 985 ntBASIC4.44□□□□□ -1.7
BRCA1P38398 AC109925.1-201ENST00000478069 331 ntBASIC4.44□□□□□ -1.7
BRCA1P38398 AC016687.1-201ENST00000482574 353 ntBASIC4.44□□□□□ -1.7
BRCA1P38398 AC004069.2-201ENST00000505438 1114 ntBASIC4.44□□□□□ -1.7
BRCA1P38398 RNA5SP341-201ENST00000516261 117 ntBASIC4.44□□□□□ -1.7
BRCA1P38398 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms