Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.48□□□□□ -1.69
VMP1Q96GC9 AL672167.1-203ENST00000641299 2975 ntBASIC4.48□□□□□ -1.69
VMP1Q96GC9 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VMP1Q96GC9 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VMP1Q96GC9 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
VMP1Q96GC9 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.48□□□□□ -1.69
VMP1Q96GC9 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VMP1Q96GC9 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VMP1Q96GC9 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
VMP1Q96GC9 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
VMP1Q96GC9 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VMP1Q96GC9 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VMP1Q96GC9 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VMP1Q96GC9 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
VMP1Q96GC9 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VMP1Q96GC9 AC073264.1-201ENST00000411508 416 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 RPL37P18-201ENST00000411602 243 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.47□□□□□ -1.69
VMP1Q96GC9 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VMP1Q96GC9 PAICSP7-201ENST00000419829 962 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.47□□□□□ -1.69
VMP1Q96GC9 HMGB1P45-201ENST00000435986 653 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.47□□□□□ -1.69
VMP1Q96GC9 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC4.47□□□□□ -1.69
VMP1Q96GC9 RAB11AP1-201ENST00000442978 646 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 TDGF1P1-201ENST00000445734 527 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 AL096803.2-201ENST00000450032 677 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.47□□□□□ -1.69
VMP1Q96GC9 AC087879.1-201ENST00000474343 374 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 RPS4XP6-201ENST00000477670 797 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 AC011005.3-201ENST00000491624 395 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VMP1Q96GC9 MTND2P31-201ENST00000512602 616 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 CDH12P4-201ENST00000517835 295 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 CDH12P3-201ENST00000517935 295 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 CDH12P1-201ENST00000518435 295 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 HIGD1AP6-201ENST00000521833 279 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 OR5BC1P-201ENST00000529327 739 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 AC069240.1-201ENST00000548774 375 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 AC011611.5-201ENST00000552477 578 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 RN7SL802P-201ENST00000577858 299 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.47□□□□□ -1.69
VMP1Q96GC9 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.47□□□□□ -1.69
VMP1Q96GC9 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC4.47□□□□□ -1.69
VMP1Q96GC9 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.47□□□□□ -1.69
VMP1Q96GC9 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VMP1Q96GC9 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
VMP1Q96GC9 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC4.47□□□□□ -1.69
VMP1Q96GC9 AC068620.4-201ENST00000636730 1182 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 LINC01808-202ENST00000641680 1116 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 ELL2P4-201ENST00000446870 1376 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 AL512283.1-201ENST00000606756 1384 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VMP1Q96GC9 AP001486.2-201ENST00000561652 5113 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VMP1Q96GC9 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.47□□□□□ -1.69
VMP1Q96GC9 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VMP1Q96GC9 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
VMP1Q96GC9 AC026951.1-201ENST00000559530 2459 ntBASIC4.47□□□□□ -1.69
VMP1Q96GC9 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
VMP1Q96GC9 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.46□□□□□ -1.69
VMP1Q96GC9 MTCO1P4-201ENST00000520516 1409 ntBASIC4.46□□□□□ -1.69
VMP1Q96GC9 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.46□□□□□ -1.7
VMP1Q96GC9 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VMP1Q96GC9 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
VMP1Q96GC9 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VMP1Q96GC9 MIR448-201ENST00000362131 111 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
VMP1Q96GC9 MIR298-201ENST00000401212 88 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 MIR1250-201ENST00000408098 113 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.46□□□□□ -1.7
VMP1Q96GC9 AC115285.1-201ENST00000424879 736 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC4.46□□□□□ -1.7
VMP1Q96GC9 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC4.46□□□□□ -1.7
VMP1Q96GC9 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC4.46□□□□□ -1.7
VMP1Q96GC9 HSFY3P-201ENST00000444242 1191 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.46□□□□□ -1.7
VMP1Q96GC9 GTF2IP12-201ENST00000456547 356 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
VMP1Q96GC9 RPL23AP65-201ENST00000475608 468 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 TMED11P-201ENST00000479478 690 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 SCARNA22-201ENST00000503991 125 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC4.46□□□□□ -1.7
VMP1Q96GC9 AC121161.1-201ENST00000510606 652 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
VMP1Q96GC9 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.46□□□□□ -1.7
VMP1Q96GC9 IGKV2D-23-201ENST00000518179 286 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 OSBPL9P2-201ENST00000526582 1228 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 AP003049.1-201ENST00000529418 457 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.46□□□□□ -1.7
VMP1Q96GC9 AC004217.3-201ENST00000551552 878 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.46□□□□□ -1.7
VMP1Q96GC9 MTND6P33-201ENST00000571794 183 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.46□□□□□ -1.7
VMP1Q96GC9 MIR5699-201ENST00000578903 90 ntBASIC4.46□□□□□ -1.7
VMP1Q96GC9 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4.46□□□□□ -1.7
VMP1Q96GC9 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.46□□□□□ -1.7
VMP1Q96GC9 AL161616.1-201ENST00000611867 286 ntBASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms