Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 PNKDP1-201ENST00000435914 430 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 AL162739.1-201ENST00000450606 307 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 PRPF38AP1-201ENST00000451976 933 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 SDC4P-201ENST00000453285 601 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 AL645937.3-201ENST00000453647 936 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 AC026410.2-201ENST00000460281 156 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 RPL23AP40-201ENST00000487630 390 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 SNORA40.12-201ENST00000516329 111 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 SNORD60.2-201ENST00000516883 86 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 AP003181.2-201ENST00000528941 181 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 NACA-211ENST00000548563 827 ntTSL 5 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 AC034105.3-201ENST00000565294 442 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 MIR3154-201ENST00000577829 84 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 MIR6806-201ENST00000622141 64 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 MIR1302-1-201ENST00000637932 143 ntBASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
UBE3DQ7Z6J8 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 USP9YP4-201ENST00000424401 1745 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 DMD-205ENST00000359836 7339 ntTSL 5 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 SNORA69-201ENST00000383895 132 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 SNORA51.9-201ENST00000384295 124 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 Y_RNA.474-201ENST00000384341 102 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 MIR130B-202ENST00000385018 82 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 HMGB3P7-201ENST00000400214 611 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AL354719.1-201ENST00000406535 843 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 GAPDHP42-201ENST00000406848 981 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 RAB28P1-201ENST00000411517 641 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC245096.1-201ENST00000413104 546 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 SLC35E1P1-201ENST00000419313 864 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 MTCO2P5-201ENST00000422621 426 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 RPL12P12-201ENST00000424633 501 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC097463.1-201ENST00000447288 481 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC016027.4-201ENST00000450866 277 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC010301.1-201ENST00000473936 355 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC124945.1-201ENST00000485133 188 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC034222.1-201ENST00000494052 532 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC090312.1-201ENST00000580637 348 ntBASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC5.74□□□□□ -1.49
UBE3DQ7Z6J8 AC093838.1-201ENST00000613014 469 ntBASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 171.3 ms