Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC110801.1-201ENST00000623590 212 ntBASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CCDC88AQ3V6T2 AC097504.1-201ENST00000515103 2415 ntBASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 AC011266.1-201ENST00000624119 3569 ntBASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 RPL23AP57-201ENST00000332361 466 ntBASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 Y_RNA.510-201ENST00000384511 114 ntBASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 SNORA71B-202ENST00000439232 272 ntBASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 ELOCP8-201ENST00000439309 332 ntBASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 RPSAP41-201ENST00000439695 860 ntBASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 ELOCP15-201ENST00000442090 332 ntBASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 AL671855.1-201ENST00000446875 1203 ntBASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 UBE3AP2-201ENST00000429033 2259 ntBASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 CDY3P-201ENST00000454543 1618 ntBASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.59□□□□□ -1.67
CCDC88AQ3V6T2 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.68
CCDC88AQ3V6T2 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.59□□□□□ -1.68
CCDC88AQ3V6T2 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.59□□□□□ -1.68
CCDC88AQ3V6T2 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 RPL7AP73-201ENST00000413490 353 ntBASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 DBIP2-201ENST00000419076 262 ntBASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AC084759.1-201ENST00000561168 290 ntBASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AP005205.1-201ENST00000563503 508 ntBASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AC133552.5-201ENST00000604266 540 ntBASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AL669942.2-201ENST00000620352 697 ntBASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AL356274.2-201ENST00000624379 3752 ntBASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 SNORD74.4-201ENST00000364129 80 ntBASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AC245054.1-201ENST00000420944 258 ntBASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AC006994.1-201ENST00000438212 839 ntBASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AC069285.2-201ENST00000440210 275 ntBASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AC010285.3-201ENST00000511668 676 ntBASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.58□□□□□ -1.68
CCDC88AQ3V6T2 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 AC010300.1-201ENST00000600671 5134 ntBASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 LINC01109-201ENST00000603837 3081 ntBASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 ATP5JP1-201ENST00000431631 322 ntBASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 KCTD9P3-201ENST00000434597 1169 ntBASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 AL591623.2-201ENST00000449978 222 ntBASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 SEPT14P1-201ENST00000458703 648 ntBASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 RPL5P24-201ENST00000463742 885 ntBASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 RPL5P16-201ENST00000471467 790 ntBASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 RN7SL271P-201ENST00000487601 295 ntBASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 FTH1P9-201ENST00000513251 355 ntBASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 OR6C71P-202ENST00000641886 1107 ntBASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.57□□□□□ -1.68
CCDC88AQ3V6T2 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CCDC88AQ3V6T2 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms