Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC112198.1-201ENST00000505369 1220 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AP001207.1-201ENST00000524051 481 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AP001189.2-201ENST00000527320 189 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 MIR3915-201ENST00000578518 97 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC112220.3-201ENST00000605502 502 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC116651.1-201ENST00000609724 556 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC093799.2-201ENST00000610062 578 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AL136981.2-201ENST00000617319 734 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 Z69908.1-201ENST00000622603 247 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AF246928.1-201ENST00000623768 87 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 MKKS-204ENST00000639674 192 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 AC011477.1-204ENST00000623416 1325 ntBASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.93□□□□□ -1.62
PTCHD3Q3KNS1 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AL353743.4-201ENST00000422653 1547 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AC103591.2-201ENST00000265259 766 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 RNA5SP123-201ENST00000363244 119 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 RNU5D-1-201ENST00000363299 116 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 Y_RNA.408-201ENST00000383987 102 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AL133264.1-201ENST00000407157 562 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 RNU2-42P-201ENST00000410697 113 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 CTSL3P-202ENST00000412179 788 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 RPL31P54-201ENST00000429803 370 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 ATP5C1P1-201ENST00000441945 895 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 FHP1-201ENST00000442741 703 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AC010307.1-201ENST00000467206 836 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 RN7SL441P-201ENST00000492388 296 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 MTND4LP31-201ENST00000514859 294 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 RNU6-885P-201ENST00000516607 104 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AKIRIN1P1-201ENST00000547384 544 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 NOP10-202ENST00000557912 436 ntTSL 2 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 ACTR3BP3-201ENST00000565577 979 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AC011840.5-201ENST00000582125 771 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 BX005214.3-202ENST00000619809 325 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AP000648.2-201ENST00000624182 404 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AL353662.3-201ENST00000625131 237 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
PTCHD3Q3KNS1 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
PTCHD3Q3KNS1 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC4.91□□□□□ -1.62
PTCHD3Q3KNS1 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
PTCHD3Q3KNS1 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
PTCHD3Q3KNS1 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC4.91□□□□□ -1.62
PTCHD3Q3KNS1 Y_RNA.51-201ENST00000362725 102 ntBASIC4.91□□□□□ -1.62
PTCHD3Q3KNS1 RN7SKP103-201ENST00000363848 320 ntBASIC4.91□□□□□ -1.62
PTCHD3Q3KNS1 SNORD116-4-201ENST00000384733 96 ntBASIC4.91□□□□□ -1.62
PTCHD3Q3KNS1 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.91□□□□□ -1.62
PTCHD3Q3KNS1 AL133270.1-201ENST00000402635 279 ntBASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 7 ms