Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
RNF4P78317 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC5.63□□□□□ -1.51
RNF4P78317 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC5.63□□□□□ -1.51
RNF4P78317 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
RNF4P78317 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
RNF4P78317 RPL23AP57-201ENST00000332361 466 ntBASIC5.63□□□□□ -1.51
RNF4P78317 Y_RNA.46-201ENST00000362695 102 ntBASIC5.63□□□□□ -1.51
RNF4P78317 RNU1-85P-201ENST00000364127 164 ntBASIC5.63□□□□□ -1.51
RNF4P78317 RN7SKP275-201ENST00000364626 301 ntBASIC5.63□□□□□ -1.51
RNF4P78317 RNU6-921P-201ENST00000384361 107 ntBASIC5.63□□□□□ -1.51
RNF4P78317 AL049693.1-201ENST00000402760 611 ntBASIC5.63□□□□□ -1.51
RNF4P78317 RN7SKP240-201ENST00000410583 375 ntBASIC5.63□□□□□ -1.51
RNF4P78317 HMGA1P8-201ENST00000414130 321 ntBASIC5.63□□□□□ -1.51
RNF4P78317 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.63□□□□□ -1.51
RNF4P78317 MTND3P17-201ENST00000416968 344 ntBASIC5.63□□□□□ -1.51
RNF4P78317 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC5.63□□□□□ -1.51
RNF4P78317 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
RNF4P78317 TUBB4BP6-201ENST00000437576 479 ntBASIC5.63□□□□□ -1.51
RNF4P78317 RPL7P54-201ENST00000438336 674 ntBASIC5.63□□□□□ -1.51
RNF4P78317 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.63□□□□□ -1.51
RNF4P78317 PCNPP2-201ENST00000441651 455 ntBASIC5.63□□□□□ -1.51
RNF4P78317 RPL23AP20-201ENST00000447965 421 ntBASIC5.63□□□□□ -1.51
RNF4P78317 AC016027.4-201ENST00000450866 277 ntBASIC5.63□□□□□ -1.51
RNF4P78317 RAD23BP3-201ENST00000454157 1152 ntBASIC5.63□□□□□ -1.51
RNF4P78317 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.63□□□□□ -1.51
RNF4P78317 RN7SL352P-201ENST00000466002 277 ntBASIC5.63□□□□□ -1.51
RNF4P78317 AC092865.4-201ENST00000477936 615 ntBASIC5.63□□□□□ -1.51
RNF4P78317 AC114728.1-201ENST00000488289 483 ntBASIC5.63□□□□□ -1.51
RNF4P78317 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC5.63□□□□□ -1.51
RNF4P78317 AC114967.1-201ENST00000504890 259 ntBASIC5.63□□□□□ -1.51
RNF4P78317 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC5.63□□□□□ -1.51
RNF4P78317 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC5.63□□□□□ -1.51
RNF4P78317 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.63□□□□□ -1.51
RNF4P78317 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC5.63□□□□□ -1.51
RNF4P78317 AP003396.4-201ENST00000527574 265 ntBASIC5.63□□□□□ -1.51
RNF4P78317 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.63□□□□□ -1.51
RNF4P78317 AP003034.1-201ENST00000534621 422 ntBASIC5.63□□□□□ -1.51
RNF4P78317 AC079905.1-201ENST00000549280 475 ntBASIC5.63□□□□□ -1.51
RNF4P78317 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.63□□□□□ -1.51
RNF4P78317 SUB1P2-201ENST00000556401 297 ntBASIC5.63□□□□□ -1.51
RNF4P78317 RPA2P1-201ENST00000556557 721 ntBASIC5.63□□□□□ -1.51
RNF4P78317 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC5.63□□□□□ -1.51
RNF4P78317 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.63□□□□□ -1.51
RNF4P78317 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
RNF4P78317 BBIP1P1-201ENST00000602999 279 ntBASIC5.63□□□□□ -1.51
RNF4P78317 RNU6-87P-201ENST00000607561 108 ntBASIC5.63□□□□□ -1.51
RNF4P78317 AC245014.3-201ENST00000618589 347 ntBASIC5.63□□□□□ -1.51
RNF4P78317 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.63□□□□□ -1.51
RNF4P78317 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
RNF4P78317 AC024560.2-201ENST00000507981 1497 ntBASIC5.63□□□□□ -1.51
RNF4P78317 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
RNF4P78317 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
RNF4P78317 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
RNF4P78317 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC5.63□□□□□ -1.51
RNF4P78317 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
RNF4P78317 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
RNF4P78317 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
RNF4P78317 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
RNF4P78317 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
RNF4P78317 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC5.62□□□□□ -1.51
RNF4P78317 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
RNF4P78317 RPL7P25-201ENST00000404151 721 ntBASIC5.62□□□□□ -1.51
RNF4P78317 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
RNF4P78317 RN7SKP151-201ENST00000410230 316 ntBASIC5.62□□□□□ -1.51
RNF4P78317 AC127391.1-201ENST00000411737 98 ntBASIC5.62□□□□□ -1.51
RNF4P78317 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.62□□□□□ -1.51
RNF4P78317 TPMTP2-201ENST00000414372 726 ntBASIC5.62□□□□□ -1.51
RNF4P78317 SDCBPP3-201ENST00000419629 891 ntBASIC5.62□□□□□ -1.51
RNF4P78317 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.62□□□□□ -1.51
RNF4P78317 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC5.62□□□□□ -1.51
RNF4P78317 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC5.62□□□□□ -1.51
RNF4P78317 RPL7P57-201ENST00000423238 740 ntBASIC5.62□□□□□ -1.51
RNF4P78317 RPS3AP54-201ENST00000435535 734 ntBASIC5.62□□□□□ -1.51
RNF4P78317 RPS3AP38-201ENST00000435889 763 ntBASIC5.62□□□□□ -1.51
RNF4P78317 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.62□□□□□ -1.51
RNF4P78317 AC002381.1-201ENST00000447049 280 ntBASIC5.62□□□□□ -1.51
RNF4P78317 CFL1P4-201ENST00000451536 498 ntBASIC5.62□□□□□ -1.51
RNF4P78317 RPL7P22-201ENST00000466005 733 ntBASIC5.62□□□□□ -1.51
RNF4P78317 RPL31P50-201ENST00000471002 296 ntBASIC5.62□□□□□ -1.51
RNF4P78317 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC5.62□□□□□ -1.51
RNF4P78317 SCARNA15.1-201ENST00000516384 125 ntBASIC5.62□□□□□ -1.51
RNF4P78317 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC5.62□□□□□ -1.51
RNF4P78317 AC022616.6-201ENST00000520479 119 ntBASIC5.62□□□□□ -1.51
RNF4P78317 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC5.62□□□□□ -1.51
RNF4P78317 COX6CP8-201ENST00000522620 226 ntBASIC5.62□□□□□ -1.51
RNF4P78317 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC5.62□□□□□ -1.51
RNF4P78317 OR5M2P-201ENST00000529003 936 ntBASIC5.62□□□□□ -1.51
RNF4P78317 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.62□□□□□ -1.51
RNF4P78317 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC5.62□□□□□ -1.51
RNF4P78317 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC5.62□□□□□ -1.51
RNF4P78317 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.62□□□□□ -1.51
RNF4P78317 AC007956.1-201ENST00000555623 542 ntBASIC5.62□□□□□ -1.51
RNF4P78317 HSPE1P3-201ENST00000559254 309 ntBASIC5.62□□□□□ -1.51
RNF4P78317 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.62□□□□□ -1.51
RNF4P78317 AP005119.1-201ENST00000580956 292 ntBASIC5.62□□□□□ -1.51
RNF4P78317 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.62□□□□□ -1.51
RNF4P78317 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC5.62□□□□□ -1.51
RNF4P78317 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.62□□□□□ -1.51
RNF4P78317 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.62□□□□□ -1.51
RNF4P78317 AL162413.1-201ENST00000603198 110 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms