Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA1P49639 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA1P49639 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
HOXA1P49639 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
HOXA1P49639 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
HOXA1P49639 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA1P49639 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA1P49639 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA1P49639 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA1P49639 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA1P49639 AC095050.2-201ENST00000510748 1458 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA1P49639 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA1P49639 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA1P49639 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA1P49639 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA1P49639 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
HOXA1P49639 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA1P49639 MIR323A-201ENST00000362199 86 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 RNU4-4P-201ENST00000364588 130 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA1P49639 RNU6-157P-201ENST00000383957 107 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 SNORA67-201ENST00000384423 137 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 MIR600-201ENST00000385007 98 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 SNORD65.1-201ENST00000390889 71 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA1P49639 MIR1302-8-201ENST00000408342 128 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 RNU6-757P-201ENST00000410334 100 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 RNU2-6P-201ENST00000411404 190 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA1P49639 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA1P49639 AL161449.1-201ENST00000414531 1199 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA1P49639 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA1P49639 PAICSP7-201ENST00000419829 962 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC006960.1-201ENST00000419980 153 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 CKS1BP6-201ENST00000424932 240 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 MTCO3P21-201ENST00000430791 643 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA1P49639 MTND1P32-201ENST00000433043 938 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC012075.1-201ENST00000436549 580 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 PCNPP2-201ENST00000441651 455 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AL161636.2-201ENST00000445179 927 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA1P49639 HMGB1P48-201ENST00000446155 598 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 HMGN1P36-201ENST00000446623 298 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC239809.1-201ENST00000450470 217 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA1P49639 RNU7-125P-201ENST00000458760 62 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC117394.1-201ENST00000477323 567 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC015724.1-201ENST00000478577 156 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 GAPDHP39-201ENST00000481866 979 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 RPS27P23-201ENST00000487608 251 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA1P49639 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA1P49639 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA1P49639 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA1P49639 AC105313.1-201ENST00000509121 353 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC116353.3-201ENST00000511215 249 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA1P49639 snoU109.6-201ENST00000516831 118 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 RN7SKP283-201ENST00000517197 270 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 RNA5SP373-201ENST00000517271 95 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA1P49639 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.06□□□□□ -1.76
HOXA1P49639 AP003461.1-201ENST00000528866 78 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC107016.1-201ENST00000550463 337 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA1P49639 AC007424.1-203ENST00000554613 687 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC022404.1-201ENST00000555320 273 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC008015.1-201ENST00000555505 465 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA1P49639 CASC16-202ENST00000563844 610 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA1P49639 MIR4666A-201ENST00000580160 79 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA1P49639 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA1P49639 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA1P49639 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC4.06□□□□□ -1.76
HOXA1P49639 AC008521.2-201ENST00000591021 259 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC010620.1-201ENST00000601088 1102 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 Z99497.2-201ENST00000603634 310 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 SUGT1P3-202ENST00000604259 383 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC080013.6-201ENST00000606185 215 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC245008.1-201ENST00000608123 476 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 OR6R2P-201ENST00000609216 300 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 AC234782.5-201ENST00000617723 324 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA1P49639 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXA1P49639 MIR3974-201ENST00000637126 96 ntBASIC4.06□□□□□ -1.76
HOXA1P49639 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
HOXA1P49639 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA1P49639 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA1P49639 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
HOXA1P49639 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA1P49639 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXA1P49639 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXA1P49639 AL672167.1-203ENST00000641299 2975 ntBASIC4.05□□□□□ -1.76
HOXA1P49639 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms