Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC027309.2-201ENST00000520566 192 ntBASIC4.47□□□□□ -1.69
SOX2P48431 AC112191.2-201ENST00000522428 333 ntBASIC4.47□□□□□ -1.69
SOX2P48431 TOMM20P1-201ENST00000534518 427 ntBASIC4.47□□□□□ -1.69
SOX2P48431 AC068993.1-201ENST00000546724 589 ntBASIC4.47□□□□□ -1.69
SOX2P48431 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC4.47□□□□□ -1.69
SOX2P48431 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.47□□□□□ -1.69
SOX2P48431 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SOX2P48431 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC4.47□□□□□ -1.69
SOX2P48431 ROCK1P1-201ENST00000573767 549 ntBASIC4.47□□□□□ -1.69
SOX2P48431 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.47□□□□□ -1.69
SOX2P48431 MIR1273E-201ENST00000581165 102 ntBASIC4.47□□□□□ -1.69
SOX2P48431 MIR3936-201ENST00000584304 110 ntBASIC4.47□□□□□ -1.69
SOX2P48431 AC017100.2-201ENST00000584628 355 ntBASIC4.47□□□□□ -1.69
SOX2P48431 RSL24D1P11-201ENST00000591045 491 ntBASIC4.47□□□□□ -1.69
SOX2P48431 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.47□□□□□ -1.69
SOX2P48431 AC103591.3-201ENST00000608684 209 ntBASIC4.47□□□□□ -1.69
SOX2P48431 AC092650.2-201ENST00000619984 902 ntBASIC4.47□□□□□ -1.69
SOX2P48431 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC4.47□□□□□ -1.69
SOX2P48431 AC090582.1-201ENST00000636321 199 ntBASIC4.47□□□□□ -1.69
SOX2P48431 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.47□□□□□ -1.69
SOX2P48431 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
SOX2P48431 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SOX2P48431 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SOX2P48431 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.47□□□□□ -1.69
SOX2P48431 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
SOX2P48431 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SOX2P48431 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.46□□□□□ -1.69
SOX2P48431 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.46□□□□□ -1.69
SOX2P48431 NEAT1-202ENST00000501122 22743 ntBASIC4.46□□□□□ -1.7
SOX2P48431 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SOX2P48431 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
SOX2P48431 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
SOX2P48431 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.46□□□□□ -1.7
SOX2P48431 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SOX2P48431 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SOX2P48431 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SOX2P48431 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.46□□□□□ -1.7
SOX2P48431 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.46□□□□□ -1.7
SOX2P48431 CASC19-221ENST00000641309 1382 ntBASIC4.46□□□□□ -1.7
SOX2P48431 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.46□□□□□ -1.7
SOX2P48431 CGA-201ENST00000369582 729 ntTSL 5 BASIC4.46□□□□□ -1.7
SOX2P48431 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
SOX2P48431 Y_RNA.559-201ENST00000384686 107 ntBASIC4.46□□□□□ -1.7
SOX2P48431 MIR92A2-201ENST00000385299 75 ntBASIC4.46□□□□□ -1.7
SOX2P48431 RNU1-77P-201ENST00000390868 162 ntBASIC4.46□□□□□ -1.7
SOX2P48431 RNU1-149P-201ENST00000390870 161 ntBASIC4.46□□□□□ -1.7
SOX2P48431 SNORA68.2-201ENST00000391263 128 ntBASIC4.46□□□□□ -1.7
SOX2P48431 CYCSP45-201ENST00000402289 315 ntBASIC4.46□□□□□ -1.7
SOX2P48431 VN1R12P-201ENST00000403778 876 ntBASIC4.46□□□□□ -1.7
SOX2P48431 TPMTP3-201ENST00000411928 735 ntBASIC4.46□□□□□ -1.7
SOX2P48431 RPL23AP39-201ENST00000415533 405 ntBASIC4.46□□□□□ -1.7
SOX2P48431 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.46□□□□□ -1.7
SOX2P48431 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC4.46□□□□□ -1.7
SOX2P48431 RPL36AP10-201ENST00000421785 322 ntBASIC4.46□□□□□ -1.7
SOX2P48431 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC4.46□□□□□ -1.7
SOX2P48431 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.46□□□□□ -1.7
SOX2P48431 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC4.46□□□□□ -1.7
SOX2P48431 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC4.46□□□□□ -1.7
SOX2P48431 AC241584.1-201ENST00000438469 1241 ntBASIC4.46□□□□□ -1.7
SOX2P48431 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC4.46□□□□□ -1.7
SOX2P48431 AP000936.2-201ENST00000447151 681 ntBASIC4.46□□□□□ -1.7
SOX2P48431 RPL23AP15-201ENST00000450202 459 ntBASIC4.46□□□□□ -1.7
SOX2P48431 AC243772.1-201ENST00000451620 410 ntBASIC4.46□□□□□ -1.7
SOX2P48431 VN1R32P-201ENST00000452234 905 ntBASIC4.46□□□□□ -1.7
SOX2P48431 RN7SL447P-201ENST00000494711 245 ntBASIC4.46□□□□□ -1.7
SOX2P48431 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.46□□□□□ -1.7
SOX2P48431 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.46□□□□□ -1.7
SOX2P48431 RNY4P37-201ENST00000516225 96 ntBASIC4.46□□□□□ -1.7
SOX2P48431 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC4.46□□□□□ -1.7
SOX2P48431 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC4.46□□□□□ -1.7
SOX2P48431 SLC2A13P1-201ENST00000531560 322 ntBASIC4.46□□□□□ -1.7
SOX2P48431 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SOX2P48431 AC092851.1-201ENST00000535964 478 ntBASIC4.46□□□□□ -1.7
SOX2P48431 OR7K1P-201ENST00000546439 926 ntBASIC4.46□□□□□ -1.7
SOX2P48431 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.46□□□□□ -1.7
SOX2P48431 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC4.46□□□□□ -1.7
SOX2P48431 SERPINE4P-201ENST00000554978 281 ntBASIC4.46□□□□□ -1.7
SOX2P48431 NDUFB4P11-201ENST00000560510 395 ntBASIC4.46□□□□□ -1.7
SOX2P48431 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC4.46□□□□□ -1.7
SOX2P48431 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.46□□□□□ -1.7
SOX2P48431 RN7SL435P-201ENST00000584418 282 ntBASIC4.46□□□□□ -1.7
SOX2P48431 PSMA6P4-201ENST00000603247 718 ntBASIC4.46□□□□□ -1.7
SOX2P48431 AC095055.1-201ENST00000603472 1113 ntBASIC4.46□□□□□ -1.7
SOX2P48431 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.46□□□□□ -1.7
SOX2P48431 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.46□□□□□ -1.7
SOX2P48431 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.46□□□□□ -1.7
SOX2P48431 AC007204.2-201ENST00000615022 616 ntBASIC4.46□□□□□ -1.7
SOX2P48431 AC092656.1-203ENST00000624134 423 ntBASIC4.46□□□□□ -1.7
SOX2P48431 AC074101.1-201ENST00000637861 241 ntBASIC4.46□□□□□ -1.7
SOX2P48431 OR2L1P-202ENST00000641567 1023 ntBASIC4.46□□□□□ -1.7
SOX2P48431 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
SOX2P48431 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.46□□□□□ -1.7
SOX2P48431 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.46□□□□□ -1.7
SOX2P48431 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.46□□□□□ -1.7
SOX2P48431 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.46□□□□□ -1.7
SOX2P48431 ALB-209ENST00000503124 1741 ntTSL 5 BASIC4.46□□□□□ -1.7
SOX2P48431 AC126323.6-202ENST00000568092 3511 ntBASIC4.46□□□□□ -1.7
SOX2P48431 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SOX2P48431 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.45□□□□□ -1.7
SOX2P48431 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms