Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL137072.1-201ENST00000603444 466 ntBASIC4.09□□□□□ -1.75
SOX3P41225 AC133552.5-201ENST00000604266 540 ntBASIC4.09□□□□□ -1.75
SOX3P41225 AC010201.1-201ENST00000605051 540 ntBASIC4.09□□□□□ -1.75
SOX3P41225 AC093673.2-201ENST00000609674 331 ntBASIC4.09□□□□□ -1.75
SOX3P41225 AC083809.1-201ENST00000615051 472 ntBASIC4.09□□□□□ -1.75
SOX3P41225 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
SOX3P41225 AC011944.2-201ENST00000624440 683 ntBASIC4.09□□□□□ -1.75
SOX3P41225 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC4.09□□□□□ -1.75
SOX3P41225 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SOX3P41225 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.09□□□□□ -1.75
SOX3P41225 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
SOX3P41225 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.09□□□□□ -1.75
SOX3P41225 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SOX3P41225 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.09□□□□□ -1.76
SOX3P41225 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.09□□□□□ -1.76
SOX3P41225 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
SOX3P41225 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
SOX3P41225 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
SOX3P41225 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.08□□□□□ -1.76
SOX3P41225 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
SOX3P41225 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.08□□□□□ -1.76
SOX3P41225 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
SOX3P41225 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SOX3P41225 OR5P1P-201ENST00000299512 925 ntBASIC4.08□□□□□ -1.76
SOX3P41225 RHOT1P2-201ENST00000366423 333 ntBASIC4.08□□□□□ -1.76
SOX3P41225 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.08□□□□□ -1.76
SOX3P41225 DNAJC19P6-201ENST00000401853 280 ntBASIC4.08□□□□□ -1.76
SOX3P41225 MTCO2P8-201ENST00000412213 658 ntBASIC4.08□□□□□ -1.76
SOX3P41225 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.08□□□□□ -1.76
SOX3P41225 MTND4P26-201ENST00000415971 1359 ntBASIC4.08□□□□□ -1.76
SOX3P41225 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC4.08□□□□□ -1.76
SOX3P41225 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.08□□□□□ -1.76
SOX3P41225 AC048351.1-201ENST00000420064 602 ntBASIC4.08□□□□□ -1.76
SOX3P41225 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC4.08□□□□□ -1.76
SOX3P41225 RPS29P17-201ENST00000430795 166 ntBASIC4.08□□□□□ -1.76
SOX3P41225 RPS24P8-201ENST00000431490 402 ntBASIC4.08□□□□□ -1.76
SOX3P41225 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.08□□□□□ -1.76
SOX3P41225 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC4.08□□□□□ -1.76
SOX3P41225 AC092170.1-201ENST00000440211 356 ntBASIC4.08□□□□□ -1.76
SOX3P41225 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.08□□□□□ -1.76
SOX3P41225 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.08□□□□□ -1.76
SOX3P41225 SEPT14P24-201ENST00000447236 180 ntBASIC4.08□□□□□ -1.76
SOX3P41225 OR51B8P-201ENST00000449892 769 ntBASIC4.08□□□□□ -1.76
SOX3P41225 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.08□□□□□ -1.76
SOX3P41225 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC4.08□□□□□ -1.76
SOX3P41225 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SOX3P41225 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SOX3P41225 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.08□□□□□ -1.76
SOX3P41225 RPL7P32-201ENST00000457119 744 ntBASIC4.08□□□□□ -1.76
SOX3P41225 RPL23AP12-201ENST00000467573 473 ntBASIC4.08□□□□□ -1.76
SOX3P41225 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SOX3P41225 AC083829.1-201ENST00000503756 657 ntBASIC4.08□□□□□ -1.76
SOX3P41225 UBE2V1P12-201ENST00000503954 474 ntBASIC4.08□□□□□ -1.76
SOX3P41225 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.08□□□□□ -1.76
SOX3P41225 IFITM8P-201ENST00000522529 394 ntBASIC4.08□□□□□ -1.76
SOX3P41225 AC107918.3-201ENST00000533272 382 ntBASIC4.08□□□□□ -1.76
SOX3P41225 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC4.08□□□□□ -1.76
SOX3P41225 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC4.08□□□□□ -1.76
SOX3P41225 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SOX3P41225 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.08□□□□□ -1.76
SOX3P41225 AL121594.4-201ENST00000556211 1196 ntBASIC4.08□□□□□ -1.76
SOX3P41225 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC4.08□□□□□ -1.76
SOX3P41225 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.08□□□□□ -1.76
SOX3P41225 RN7SL339P-201ENST00000580597 296 ntBASIC4.08□□□□□ -1.76
SOX3P41225 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.08□□□□□ -1.76
SOX3P41225 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.08□□□□□ -1.76
SOX3P41225 AC034229.4-201ENST00000607861 441 ntBASIC4.08□□□□□ -1.76
SOX3P41225 MLECP1-201ENST00000615893 709 ntBASIC4.08□□□□□ -1.76
SOX3P41225 MIR6891-201ENST00000618788 93 ntBASIC4.08□□□□□ -1.76
SOX3P41225 AL590396.4-201ENST00000636779 956 ntBASIC4.08□□□□□ -1.76
SOX3P41225 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
SOX3P41225 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.08□□□□□ -1.76
SOX3P41225 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.08□□□□□ -1.76
SOX3P41225 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.08□□□□□ -1.76
SOX3P41225 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SOX3P41225 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SOX3P41225 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
SOX3P41225 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
SOX3P41225 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.07□□□□□ -1.76
SOX3P41225 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SOX3P41225 RNF6P1-201ENST00000444889 1784 ntBASIC4.07□□□□□ -1.76
SOX3P41225 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.07□□□□□ -1.76
SOX3P41225 AL592182.3-201ENST00000642132 3304 ntBASIC4.07□□□□□ -1.76
SOX3P41225 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SOX3P41225 AC106754.1-201ENST00000562632 1513 ntBASIC4.07□□□□□ -1.76
SOX3P41225 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SOX3P41225 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
SOX3P41225 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
SOX3P41225 MIR331-201ENST00000362302 94 ntBASIC4.07□□□□□ -1.76
SOX3P41225 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
SOX3P41225 RNU6-317P-201ENST00000384031 107 ntBASIC4.07□□□□□ -1.76
SOX3P41225 AC136624.1-201ENST00000400791 413 ntBASIC4.07□□□□□ -1.76
SOX3P41225 AC092745.2-202ENST00000411880 369 ntBASIC4.07□□□□□ -1.76
SOX3P41225 RPS20P14-201ENST00000412545 360 ntBASIC4.07□□□□□ -1.76
SOX3P41225 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.07□□□□□ -1.76
SOX3P41225 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC4.07□□□□□ -1.76
SOX3P41225 AC073335.1-201ENST00000427776 363 ntBASIC4.07□□□□□ -1.76
SOX3P41225 RPL23AP25-201ENST00000430973 463 ntBASIC4.07□□□□□ -1.76
SOX3P41225 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
SOX3P41225 RPS3AP54-201ENST00000435535 734 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms