Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC5.45□□□□□ -1.54
COL3A1P02461 IGKV3OR22-2-201ENST00000517943 313 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 HMGB1P23-201ENST00000518743 568 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC5.45□□□□□ -1.54
COL3A1P02461 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC5.45□□□□□ -1.54
COL3A1P02461 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC5.45□□□□□ -1.54
COL3A1P02461 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL3A1P02461 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC5.45□□□□□ -1.54
COL3A1P02461 AC109446.2-201ENST00000567872 497 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AC008759.3-201ENST00000613300 508 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.45□□□□□ -1.54
COL3A1P02461 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL3A1P02461 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL3A1P02461 MTND5P12-201ENST00000502851 1449 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL3A1P02461 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL3A1P02461 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL3A1P02461 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL3A1P02461 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL3A1P02461 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL3A1P02461 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL3A1P02461 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
COL3A1P02461 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
COL3A1P02461 RPL17P50-201ENST00000396131 546 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 VDAC2P1-201ENST00000399358 958 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 HMGB1P13-201ENST00000406019 642 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC5.45□□□□□ -1.54
COL3A1P02461 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC5.45□□□□□ -1.54
COL3A1P02461 SEPT2P1-201ENST00000419651 180 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC5.45□□□□□ -1.54
COL3A1P02461 MRPS33P4-201ENST00000434892 317 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 RPL23AP89-201ENST00000439324 255 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC5.45□□□□□ -1.54
COL3A1P02461 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC5.45□□□□□ -1.54
COL3A1P02461 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC5.45□□□□□ -1.54
COL3A1P02461 USP9YP25-201ENST00000457708 443 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 RPL7P1-201ENST00000468161 747 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 RPL7P9-201ENST00000468715 747 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC5.45□□□□□ -1.54
COL3A1P02461 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC5.45□□□□□ -1.54
COL3A1P02461 RNU7-143P-201ENST00000516781 65 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 OSBPL9P3-201ENST00000534523 595 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AC110743.1-201ENST00000584870 478 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AC068790.6-201ENST00000602558 258 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 RNU4-5P-201ENST00000607255 135 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AC004775.1-201ENST00000607389 753 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AC084036.1-201ENST00000609190 508 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AC024941.1-201ENST00000612250 334 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC5.45□□□□□ -1.54
COL3A1P02461 AC073534.2-201ENST00000620377 381 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AC095038.2-201ENST00000621464 1070 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AP003400.5-201ENST00000624827 617 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.45□□□□□ -1.54
COL3A1P02461 AC112198.2-201ENST00000426589 6996 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL3A1P02461 Z95327.2-201ENST00000414579 1873 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 MTND4P8-201ENST00000514997 1362 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.44□□□□□ -1.54
COL3A1P02461 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL3A1P02461 AL122126.1-201ENST00000546905 1318 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL3A1P02461 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
COL3A1P02461 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL3A1P02461 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL3A1P02461 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.44□□□□□ -1.54
COL3A1P02461 RNU6-623P-201ENST00000363143 105 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 SNORA27.3-201ENST00000364937 134 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
COL3A1P02461 RNU6-192P-201ENST00000391253 100 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.44□□□□□ -1.54
COL3A1P02461 RNU4-6P-201ENST00000410804 122 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 RN7SKP97-201ENST00000410966 333 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.44□□□□□ -1.54
COL3A1P02461 RPL22P18-201ENST00000417197 377 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC5.44□□□□□ -1.54
COL3A1P02461 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC5.44□□□□□ -1.54
COL3A1P02461 MTND4LP13-201ENST00000425022 298 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.44□□□□□ -1.54
COL3A1P02461 AC083863.1-201ENST00000438811 231 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 RPL38P1-201ENST00000460914 211 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC5.44□□□□□ -1.54
COL3A1P02461 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.44□□□□□ -1.54
COL3A1P02461 AC087369.1-201ENST00000520775 996 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC5.44□□□□□ -1.54
COL3A1P02461 AP003717.3-201ENST00000544832 1180 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 CKS1BP1-201ENST00000555221 240 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC5.44□□□□□ -1.54
COL3A1P02461 AL109653.1-201ENST00000603091 248 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 AC112503.1-201ENST00000608436 391 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 AC117490.2-201ENST00000610042 594 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 MIR6868-201ENST00000611215 58 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 AC008785.1-201ENST00000624475 456 ntBASIC5.44□□□□□ -1.54
COL3A1P02461 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL3A1P02461 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
COL3A1P02461 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL3A1P02461 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL3A1P02461 AC110792.3-201ENST00000595906 1614 ntBASIC5.43□□□□□ -1.54
COL3A1P02461 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL3A1P02461 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms