Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC084373.1-201ENST00000603311 235 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AC104662.1-201ENST00000604448 511 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AC099785.1-201ENST00000605697 437 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AP002802.2-201ENST00000605877 235 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AC012557.1-201ENST00000607115 611 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AC068787.1-201ENST00000623908 691 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.41□□□□□ -1.7
SIX2Q9NPC8 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.41□□□□□ -1.7
SIX2Q9NPC8 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
SIX2Q9NPC8 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.7
SIX2Q9NPC8 NEAT1-202ENST00000501122 22743 ntBASIC4.4□□□□□ -1.7
SIX2Q9NPC8 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.4□□□□□ -1.7
SIX2Q9NPC8 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
SIX2Q9NPC8 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.4□□□□□ -1.7
SIX2Q9NPC8 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
SIX2Q9NPC8 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.4□□□□□ -1.7
SIX2Q9NPC8 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.4□□□□□ -1.7
SIX2Q9NPC8 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.4□□□□□ -1.7
SIX2Q9NPC8 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
SIX2Q9NPC8 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 RNU6-298P-201ENST00000390888 96 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 AL121834.1-202ENST00000404494 277 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 RPS3AP25-201ENST00000411660 793 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 FAR2P2-201ENST00000413041 594 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 AC009480.2-201ENST00000422916 432 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 DNAJC19P7-201ENST00000428811 344 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 NANOGP6-201ENST00000429190 847 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 GSTA7P-201ENST00000438425 448 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 ARF4P4-201ENST00000439608 520 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 TPTE2P3-201ENST00000441562 1189 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 RPS27AP13-201ENST00000498403 237 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 SUMO2P4-201ENST00000504193 276 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 RN7SKP141-201ENST00000516167 338 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 CDH12P4-201ENST00000517835 295 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 CDH12P3-201ENST00000517935 295 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 CDH12P1-201ENST00000518435 295 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 AC010735.1-201ENST00000567305 1026 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 MIR4509-3-201ENST00000578671 94 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 MIR4509-2-201ENST00000583920 94 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 CYCSP41-201ENST00000616920 296 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 MIR4509-1-201ENST00000618224 94 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 AC233309.1-201ENST00000619522 751 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 KPNA2P2-201ENST00000419546 1489 ntBASIC4.4□□□□□ -1.71
SIX2Q9NPC8 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
SIX2Q9NPC8 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SIX2Q9NPC8 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SIX2Q9NPC8 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
SIX2Q9NPC8 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
SIX2Q9NPC8 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
SIX2Q9NPC8 AC126755.2-208ENST00000327792 462 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 AC138969.1-213ENST00000331436 462 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 MIR383-201ENST00000362257 73 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 RNU4-7P-201ENST00000364758 141 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 RPS27AP11-201ENST00000402798 447 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 RN7SKP33-201ENST00000410942 340 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 UBE2V1P11-201ENST00000411559 285 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 RPL37P18-201ENST00000411602 243 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 AC010385.1-201ENST00000412374 256 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 AC004552.1-201ENST00000419089 348 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC4.39□□□□□ -1.71
SIX2Q9NPC8 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.39□□□□□ -1.71
SIX2Q9NPC8 RPL18P10-201ENST00000425606 538 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SIX2Q9NPC8 DEFB130D-201ENST00000426866 237 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 AC005189.1-201ENST00000431286 310 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC4.39□□□□□ -1.71
SIX2Q9NPC8 RPS26P3-201ENST00000470205 348 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 UQCRHP4-201ENST00000471686 272 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 AC090543.2-201ENST00000483963 348 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 AC004057.1-201ENST00000485827 348 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC4.39□□□□□ -1.71
SIX2Q9NPC8 CDH12P2-201ENST00000504393 298 ntBASIC4.39□□□□□ -1.71
SIX2Q9NPC8 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.39□□□□□ -1.71
SIX2Q9NPC8 SNORA31.13-201ENST00000516624 135 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms