Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 RFPL4AP5-201ENST00000514977 504 ntBASIC5.66□□□□□ -1.5
SCAPERQ9BY12 RN7SKP289-201ENST00000517244 295 ntBASIC5.66□□□□□ -1.5
SCAPERQ9BY12 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.66□□□□□ -1.5
SCAPERQ9BY12 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC5.66□□□□□ -1.5
SCAPERQ9BY12 AC006077.1-201ENST00000604746 343 ntBASIC5.66□□□□□ -1.5
SCAPERQ9BY12 AL354760.1-201ENST00000608357 643 ntBASIC5.66□□□□□ -1.5
SCAPERQ9BY12 AC095038.2-201ENST00000621464 1070 ntBASIC5.66□□□□□ -1.5
SCAPERQ9BY12 ATE1-AS1-202ENST00000636460 506 ntBASIC5.66□□□□□ -1.5
SCAPERQ9BY12 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SCAPERQ9BY12 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SCAPERQ9BY12 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
SCAPERQ9BY12 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
SCAPERQ9BY12 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
SCAPERQ9BY12 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SCAPERQ9BY12 MTCO1P7-201ENST00000419523 1542 ntBASIC5.66□□□□□ -1.5
SCAPERQ9BY12 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 AL160275.2-201ENST00000412010 394 ntBASIC5.65□□□□□ -1.5
SCAPERQ9BY12 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 FTH1P25-201ENST00000447665 469 ntBASIC5.65□□□□□ -1.5
SCAPERQ9BY12 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 SNORA70.18-201ENST00000516696 98 ntBASIC5.65□□□□□ -1.5
SCAPERQ9BY12 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 AC115621.1-201ENST00000604653 858 ntBASIC5.65□□□□□ -1.5
SCAPERQ9BY12 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
SCAPERQ9BY12 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.65□□□□□ -1.5
SCAPERQ9BY12 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
SCAPERQ9BY12 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC5.65□□□□□ -1.51
SCAPERQ9BY12 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.65□□□□□ -1.51
SCAPERQ9BY12 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SCAPERQ9BY12 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC5.65□□□□□ -1.51
SCAPERQ9BY12 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC5.65□□□□□ -1.51
SCAPERQ9BY12 AC236972.1-201ENST00000433225 199 ntBASIC5.65□□□□□ -1.51
SCAPERQ9BY12 AC006994.1-201ENST00000438212 839 ntBASIC5.65□□□□□ -1.51
SCAPERQ9BY12 SNORA71B-202ENST00000439232 272 ntBASIC5.65□□□□□ -1.51
SCAPERQ9BY12 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC5.65□□□□□ -1.51
SCAPERQ9BY12 RNA5SP208-201ENST00000516156 78 ntBASIC5.65□□□□□ -1.51
SCAPERQ9BY12 AC090136.1-201ENST00000520009 240 ntBASIC5.65□□□□□ -1.51
SCAPERQ9BY12 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC5.65□□□□□ -1.51
SCAPERQ9BY12 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC5.64□□□□□ -1.51
SCAPERQ9BY12 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SCAPERQ9BY12 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SCAPERQ9BY12 AL133383.2-201ENST00000622958 2336 ntBASIC5.64□□□□□ -1.51
SCAPERQ9BY12 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC5.64□□□□□ -1.51
SCAPERQ9BY12 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SCAPERQ9BY12 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SCAPERQ9BY12 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SCAPERQ9BY12 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SCAPERQ9BY12 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SCAPERQ9BY12 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SCAPERQ9BY12 AC005019.1-201ENST00000436455 431 ntBASIC5.64□□□□□ -1.51
SCAPERQ9BY12 HCG17-214ENST00000453558 732 ntTSL 5 BASIC5.64□□□□□ -1.51
SCAPERQ9BY12 RNU2-27P-201ENST00000516185 142 ntBASIC5.64□□□□□ -1.51
SCAPERQ9BY12 NCAPGP2-201ENST00000557911 754 ntBASIC5.64□□□□□ -1.51
SCAPERQ9BY12 AC068790.5-201ENST00000602741 355 ntBASIC5.64□□□□□ -1.51
SCAPERQ9BY12 MIR6852-201ENST00000621699 66 ntBASIC5.64□□□□□ -1.51
SCAPERQ9BY12 AL773545.4-201ENST00000637262 310 ntBASIC5.64□□□□□ -1.51
SCAPERQ9BY12 AL513478.4-201ENST00000641636 310 ntBASIC5.64□□□□□ -1.51
SCAPERQ9BY12 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC5.64□□□□□ -1.51
SCAPERQ9BY12 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SCAPERQ9BY12 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC5.64□□□□□ -1.51
SCAPERQ9BY12 HCFC2P1-201ENST00000392864 1592 ntBASIC5.64□□□□□ -1.51
SCAPERQ9BY12 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 AC006511.1-201ENST00000470614 315 ntBASIC5.63□□□□□ -1.51
SCAPERQ9BY12 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 PPBPP1-201ENST00000510807 373 ntBASIC5.63□□□□□ -1.51
SCAPERQ9BY12 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 AC024023.1-201ENST00000624530 922 ntBASIC5.63□□□□□ -1.51
SCAPERQ9BY12 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SCAPERQ9BY12 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC5.62□□□□□ -1.51
SCAPERQ9BY12 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SCAPERQ9BY12 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC5.62□□□□□ -1.51
SCAPERQ9BY12 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SCAPERQ9BY12 KPNA2P2-201ENST00000419546 1489 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms