Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 XKRYP5-201ENST00000449659 483 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 ABCF2P2-201ENST00000450549 296 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC005912.1-201ENST00000495392 255 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC010374.1-201ENST00000503762 1237 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC093840.1-201ENST00000511599 336 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 IGKV2D-23-201ENST00000518179 286 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 RAB9BP1-201ENST00000519581 626 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 MTND2P7-201ENST00000521337 640 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 IGLVIV-66-1-201ENST00000521832 460 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC009643.1-201ENST00000532030 391 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 OSBPL9P3-201ENST00000534523 595 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SKA3Q8IX90 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC079148.1-201ENST00000565944 819 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC010200.2-201ENST00000605098 235 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 MIR6748-201ENST00000610433 71 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 uc_338.32-201ENST00000615087 172 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC245389.2-201ENST00000616023 576 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC242843.1-201ENST00000618702 573 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC006213.5-201ENST00000619673 288 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC010435.1-201ENST00000623353 1177 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC011944.2-201ENST00000624440 683 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC114546.3-201ENST00000623582 1734 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
SKA3Q8IX90 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 CYP1D1P-201ENST00000416662 1433 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.77□□□□□ -1.81
SKA3Q8IX90 AL158163.1-201ENST00000603915 1649 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SKA3Q8IX90 AL512283.1-201ENST00000606756 1384 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
SKA3Q8IX90 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 RNU1-89P-201ENST00000384592 164 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 MIR92A2-201ENST00000385299 75 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC011933.1-201ENST00000413334 321 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 TATDN1P1-201ENST00000414123 891 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 LINC01347-201ENST00000417964 355 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 MFSD13B-201ENST00000420133 1290 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 AL035458.1-201ENST00000433096 585 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 RPS3AP54-201ENST00000435535 734 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 RPL34P26-201ENST00000445636 354 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 EIF2S2P2-201ENST00000447161 982 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 HMGB3P22-202ENST00000451823 572 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC116533.1-201ENST00000459748 321 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 PPIAP21-201ENST00000464473 501 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC092045.1-201ENST00000495716 1231 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 RNU6-347P-201ENST00000516658 105 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SKA3Q8IX90 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC007424.1-203ENST00000554613 687 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 AL109766.1-201ENST00000555080 552 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC025918.2-201ENST00000558683 763 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC016957.2-201ENST00000616998 848 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 AL121890.3-201ENST00000618494 516 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC097372.4-201ENST00000625025 466 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 AC092079.1-201ENST00000558620 1985 ntBASIC3.76□□□□□ -1.81
SKA3Q8IX90 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.76□□□□□ -1.81
SKA3Q8IX90 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.75□□□□□ -1.81
SKA3Q8IX90 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
SKA3Q8IX90 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms