Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP41Q3LFD5 AL592182.3-201ENST00000642132 3304 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP41Q3LFD5 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP41Q3LFD5 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
USP41Q3LFD5 ZNF602P-201ENST00000405929 924 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 MIR1303-201ENST00000408625 86 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 RPL17P36-201ENST00000420302 549 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 RAD23BP1-201ENST00000421404 1227 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 USP12PY-201ENST00000427677 1064 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 NMNAT1P2-201ENST00000435192 860 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 TMX2P1-201ENST00000436507 708 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP41Q3LFD5 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 AL009048.1-201ENST00000450437 298 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 AC243772.1-201ENST00000451620 410 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 RPS6P2-201ENST00000454208 705 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 TRBV8-2-201ENST00000475637 270 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 AC091167.1-201ENST00000492017 396 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
USP41Q3LFD5 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
USP41Q3LFD5 SNORA31.9-201ENST00000516429 84 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
USP41Q3LFD5 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 AC006518.2-201ENST00000542513 940 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 RPL21P7-201ENST00000557463 483 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 MTCYBP23-201ENST00000558717 1102 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 AC010857.1-201ENST00000606398 594 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 AL157392.4-201ENST00000609756 345 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 MIR7973-1-201ENST00000614683 76 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 AC068787.1-201ENST00000623908 691 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP41Q3LFD5 AC073055.1-201ENST00000456901 1621 ntBASIC4.78□□□□□ -1.64
USP41Q3LFD5 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP41Q3LFD5 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
USP41Q3LFD5 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
USP41Q3LFD5 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.77□□□□□ -1.65
USP41Q3LFD5 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
USP41Q3LFD5 AC100871.1-201ENST00000507871 1456 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
USP41Q3LFD5 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 RNA5SP28-201ENST00000363841 119 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 RNA5SP366-201ENST00000365454 123 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 SNORD96B-201ENST00000386148 79 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 RPL23AP26-201ENST00000412728 464 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 SNRPFP1-201ENST00000414761 252 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 LIPT1P1-201ENST00000415870 1186 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 MTCO3P21-201ENST00000430791 643 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 RPS3AP54-201ENST00000435535 734 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 RPS26P2-201ENST00000440331 348 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 DHFRP3-201ENST00000455595 559 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 RPL23AP12-201ENST00000467573 473 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 UQCRHP4-201ENST00000471686 272 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 AC105137.1-201ENST00000484355 562 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 AC023050.1-201ENST00000498198 304 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
USP41Q3LFD5 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 AC008565.1-201ENST00000509046 885 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 PARP4P3-201ENST00000510265 317 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 MTCO1P35-201ENST00000515270 228 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 MRPL49P2-201ENST00000521066 465 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 CYCSP29-201ENST00000533731 318 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
USP41Q3LFD5 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 CYP2C60P-201ENST00000566088 139 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 AC023824.3-201ENST00000569003 562 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.77□□□□□ -1.65
USP41Q3LFD5 BPIFA4P-203ENST00000603168 689 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 AC013468.1-201ENST00000608680 598 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.77□□□□□ -1.65
USP41Q3LFD5 uc_338.13-201ENST00000618243 179 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms