Protein–RNA interactions for Protein: Q15475

SIX1, Homeobox protein SIX1, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX1Q15475 AP000240.1-201ENST00000609910 452 ntBASIC4.16□□□□□ -1.74
SIX1Q15475 MIR486-1-201ENST00000612171 68 ntBASIC4.16□□□□□ -1.74
SIX1Q15475 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.16□□□□□ -1.74
SIX1Q15475 AC006338.2-201ENST00000616864 791 ntBASIC4.16□□□□□ -1.74
SIX1Q15475 RNU6-368P-201ENST00000620928 107 ntBASIC4.16□□□□□ -1.74
SIX1Q15475 RNU6-538P-201ENST00000622329 107 ntBASIC4.16□□□□□ -1.74
SIX1Q15475 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.16□□□□□ -1.74
SIX1Q15475 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SIX1Q15475 AL590396.2-201ENST00000636511 1041 ntBASIC4.16□□□□□ -1.74
SIX1Q15475 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.16□□□□□ -1.74
SIX1Q15475 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
SIX1Q15475 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX1Q15475 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.16□□□□□ -1.74
SIX1Q15475 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX1Q15475 AC007342.7-201ENST00000624610 2337 ntBASIC4.16□□□□□ -1.74
SIX1Q15475 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
SIX1Q15475 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
SIX1Q15475 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.15□□□□□ -1.74
SIX1Q15475 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SIX1Q15475 AC026951.1-201ENST00000559530 2459 ntBASIC4.15□□□□□ -1.74
SIX1Q15475 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
SIX1Q15475 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
SIX1Q15475 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
SIX1Q15475 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
SIX1Q15475 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SIX1Q15475 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
SIX1Q15475 HMGB3P19-201ENST00000403971 560 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 AL355143.1-201ENST00000407101 841 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 RNU4-27P-201ENST00000410889 139 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 AL606495.1-201ENST00000422100 813 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 AL160175.1-201ENST00000428124 247 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.15□□□□□ -1.75
SIX1Q15475 AC096638.2-201ENST00000434965 711 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX1Q15475 RPS4XP4-201ENST00000443195 763 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 AC023512.1-201ENST00000444513 499 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC4.15□□□□□ -1.75
SIX1Q15475 FABP3P2-201ENST00000453169 399 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 RPL23AP2-201ENST00000471227 466 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.15□□□□□ -1.75
SIX1Q15475 PRELID3BP5-201ENST00000508612 460 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 AC093840.1-201ENST00000511599 336 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 AC026726.1-201ENST00000512859 601 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 AC010342.1-201ENST00000514047 877 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 RNU6-334P-201ENST00000517072 102 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX1Q15475 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC4.15□□□□□ -1.75
SIX1Q15475 AC068339.2-201ENST00000534395 618 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.15□□□□□ -1.75
SIX1Q15475 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.15□□□□□ -1.75
SIX1Q15475 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.15□□□□□ -1.75
SIX1Q15475 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX1Q15475 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX1Q15475 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.15□□□□□ -1.75
SIX1Q15475 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.15□□□□□ -1.75
SIX1Q15475 AC079880.2-201ENST00000603790 1213 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 AL356218.2-201ENST00000605264 187 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 AC034236.3-201ENST00000605999 461 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC4.15□□□□□ -1.75
SIX1Q15475 MIR6758-201ENST00000620653 63 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 AP000843.1-201ENST00000624880 701 ntBASIC4.15□□□□□ -1.75
SIX1Q15475 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC4.15□□□□□ -1.75
SIX1Q15475 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
SIX1Q15475 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC4.15□□□□□ -1.75
SIX1Q15475 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SIX1Q15475 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC4.14□□□□□ -1.75
SIX1Q15475 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SIX1Q15475 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SIX1Q15475 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SIX1Q15475 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SIX1Q15475 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.14□□□□□ -1.75
SIX1Q15475 RNU6-252P-201ENST00000363232 107 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 RNA5SP509-201ENST00000364577 119 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 RNU6-729P-201ENST00000384399 107 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.14□□□□□ -1.75
SIX1Q15475 AC011933.1-201ENST00000413334 321 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 TATDN1P1-201ENST00000414123 891 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 AL158050.1-201ENST00000416077 457 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC4.14□□□□□ -1.75
SIX1Q15475 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC4.14□□□□□ -1.75
SIX1Q15475 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.14□□□□□ -1.75
SIX1Q15475 RPL12P34-201ENST00000424532 479 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 RPL23AP4-201ENST00000427757 463 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 IFNNP1-201ENST00000429219 553 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.14□□□□□ -1.75
SIX1Q15475 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.14□□□□□ -1.75
SIX1Q15475 RPS17P13-201ENST00000448974 407 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.14□□□□□ -1.75
SIX1Q15475 AC116533.1-201ENST00000459748 321 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
SIX1Q15475 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.14□□□□□ -1.75
SIX1Q15475 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.14□□□□□ -1.75
SIX1Q15475 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
SIX1Q15475 IGBP1P5-201ENST00000507524 1000 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 AC108475.1-201ENST00000507880 950 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 AC112198.4-201ENST00000515450 351 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 RNA5SP143-201ENST00000516936 115 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 C1DP5-201ENST00000525775 383 ntBASIC4.14□□□□□ -1.75
SIX1Q15475 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.14□□□□□ -1.75
SIX1Q15475 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms