Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AL356863.1-201ENST00000623378 1080 ntBASIC4.25□□□□□ -1.73
TNFRSF4P43489 AC019278.1-201ENST00000623516 479 ntBASIC4.25□□□□□ -1.73
TNFRSF4P43489 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.25□□□□□ -1.73
TNFRSF4P43489 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.25□□□□□ -1.73
TNFRSF4P43489 TCP11X1-202ENST00000622971 1372 ntBASIC4.25□□□□□ -1.73
TNFRSF4P43489 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
TNFRSF4P43489 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
TNFRSF4P43489 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
TNFRSF4P43489 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
TNFRSF4P43489 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 RNA5SP22-201ENST00000365393 109 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 MIR554-201ENST00000384874 96 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 TPT1P2-201ENST00000413105 503 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 AL161631.1-201ENST00000417933 486 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 OR6C64P-201ENST00000419708 825 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 RPL38P1-201ENST00000460914 211 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 AL591473.1-201ENST00000464297 313 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 AL049829.1-201ENST00000465411 156 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 VN1R105P-201ENST00000486595 910 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 NPM1P28-201ENST00000492269 840 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 BNIP3P41-201ENST00000503774 571 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
TNFRSF4P43489 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 AC023632.4-201ENST00000517783 191 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 MTND4LP24-201ENST00000572277 291 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 AC022655.2-201ENST00000577280 318 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
TNFRSF4P43489 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.24□□□□□ -1.73
TNFRSF4P43489 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
TNFRSF4P43489 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
TNFRSF4P43489 AC092162.3-201ENST00000624511 1624 ntBASIC4.24□□□□□ -1.73
TNFRSF4P43489 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TNFRSF4P43489 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TNFRSF4P43489 AL161912.2-201ENST00000565707 3007 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 AL353743.4-201ENST00000422653 1547 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TNFRSF4P43489 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
TNFRSF4P43489 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 AC019155.1-201ENST00000382242 574 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 SNORA40.4-201ENST00000390971 128 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 AC023128.2-201ENST00000420880 1223 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 AC005189.1-201ENST00000431286 310 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
TNFRSF4P43489 RN7SL542P-201ENST00000467147 294 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 RPL7P1-201ENST00000468161 747 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 RPL7P9-201ENST00000468715 747 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 AC010683.1-201ENST00000473673 378 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 AC012158.1-204ENST00000483430 465 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 AC027338.1-201ENST00000514840 825 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 SNORA67.7-201ENST00000516664 135 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 OR5AK3P-201ENST00000527486 1297 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 AC090312.1-201ENST00000580637 348 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 MIR3158-1-201ENST00000583596 81 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 AL606490.9-201ENST00000603331 271 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 MIR92B-201ENST00000607575 96 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 AC090912.3-201ENST00000609775 533 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 AL512506.1-201ENST00000613918 449 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
TNFRSF4P43489 PCAT14-202ENST00000627127 3935 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 AL512283.1-201ENST00000606756 1384 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 AC100871.1-201ENST00000507871 1456 ntBASIC4.23□□□□□ -1.73
TNFRSF4P43489 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
TNFRSF4P43489 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
TNFRSF4P43489 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
TNFRSF4P43489 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
TNFRSF4P43489 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
TNFRSF4P43489 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
TNFRSF4P43489 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.22□□□□□ -1.73
TNFRSF4P43489 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 177 ms