Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.43□□□□□ -1.7
HNF4AP41235 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HNF4AP41235 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.43□□□□□ -1.7
HNF4AP41235 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
HNF4AP41235 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
HNF4AP41235 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HNF4AP41235 RNU6-925P-201ENST00000384629 104 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HNF4AP41235 AL035405.1-201ENST00000400795 710 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HNF4AP41235 FCF1P5-201ENST00000406490 482 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.43□□□□□ -1.7
HNF4AP41235 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.43□□□□□ -1.7
HNF4AP41235 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC4.43□□□□□ -1.7
HNF4AP41235 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.43□□□□□ -1.7
HNF4AP41235 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.43□□□□□ -1.7
HNF4AP41235 RBMY2KP-201ENST00000418221 992 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 EIF4EP1-201ENST00000422311 642 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4.43□□□□□ -1.7
HNF4AP41235 UBE2D3P3-201ENST00000426992 425 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 OR4F13P-201ENST00000428478 931 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 USP9YP9-201ENST00000429406 715 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC4.43□□□□□ -1.7
HNF4AP41235 RPL23AP15-201ENST00000450202 459 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 BX276092.4-201ENST00000452056 248 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC4.43□□□□□ -1.7
HNF4AP41235 DNAJC19P8-201ENST00000452887 259 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 FCF1P6-201ENST00000456841 595 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.43□□□□□ -1.7
HNF4AP41235 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.43□□□□□ -1.7
HNF4AP41235 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.43□□□□□ -1.7
HNF4AP41235 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
HNF4AP41235 CD69-203ENST00000536709 1020 ntTSL 2 BASIC4.43□□□□□ -1.7
HNF4AP41235 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.43□□□□□ -1.7
HNF4AP41235 AC135001.1-201ENST00000544546 283 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC4.43□□□□□ -1.7
HNF4AP41235 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC4.43□□□□□ -1.7
HNF4AP41235 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.43□□□□□ -1.7
HNF4AP41235 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.43□□□□□ -1.7
HNF4AP41235 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC4.43□□□□□ -1.7
HNF4AP41235 AC091979.2-201ENST00000607514 214 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 AC018645.2-201ENST00000609151 472 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 AC096586.1-201ENST00000610267 561 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 AL161616.1-201ENST00000611867 286 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 AC104763.3-201ENST00000613765 618 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HNF4AP41235 AC095038.2-201ENST00000621464 1070 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HNF4AP41235 AC023510.2-201ENST00000622162 746 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC4.43□□□□□ -1.7
HNF4AP41235 MFSD8-213ENST00000641134 1327 ntBASIC4.43□□□□□ -1.7
HNF4AP41235 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.42□□□□□ -1.7
HNF4AP41235 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC4.42□□□□□ -1.7
HNF4AP41235 AC027290.2-201ENST00000623210 18662 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
HNF4AP41235 KARSP3-201ENST00000571212 1504 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
HNF4AP41235 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HNF4AP41235 OR4K17-201ENST00000315543 1032 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 SNORD56.4-201ENST00000363883 71 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HNF4AP41235 PDSS1P1-201ENST00000422953 1114 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 PSMA2P3-201ENST00000429685 675 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 RPL23AP25-201ENST00000430973 463 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.42□□□□□ -1.7
HNF4AP41235 RPL6P5-201ENST00000445678 828 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 AC231760.1-201ENST00000498002 260 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 AC093801.2-201ENST00000503966 1050 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC4.42□□□□□ -1.7
HNF4AP41235 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.42□□□□□ -1.7
HNF4AP41235 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.42□□□□□ -1.7
HNF4AP41235 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.42□□□□□ -1.7
HNF4AP41235 AC007016.1-201ENST00000512110 244 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 AC112198.4-201ENST00000515450 351 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HNF4AP41235 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.42□□□□□ -1.7
HNF4AP41235 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HNF4AP41235 AC073429.2-201ENST00000569694 1444 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC4.42□□□□□ -1.7
HNF4AP41235 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.42□□□□□ -1.7
HNF4AP41235 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.42□□□□□ -1.7
HNF4AP41235 AC112503.1-201ENST00000608436 391 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.42□□□□□ -1.7
HNF4AP41235 AC245100.7-201ENST00000609678 442 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 AC004825.2-201ENST00000616634 455 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 C2orf27A-204ENST00000623058 969 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.42□□□□□ -1.7
HNF4AP41235 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.42□□□□□ -1.7
HNF4AP41235 AC017104.4-201ENST00000636283 1592 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 AC132825.7-201ENST00000638744 335 ntBASIC4.42□□□□□ -1.7
HNF4AP41235 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HNF4AP41235 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.42□□□□□ -1.7
HNF4AP41235 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.42□□□□□ -1.7
HNF4AP41235 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
HNF4AP41235 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.42□□□□□ -1.7
HNF4AP41235 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HNF4AP41235 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
HNF4AP41235 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms