Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC4.74□□□□□ -1.65
COL18A1P39060 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
COL18A1P39060 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL18A1P39060 RNA5SP197-201ENST00000363357 119 ntBASIC4.74□□□□□ -1.65
COL18A1P39060 Y_RNA.510-201ENST00000384511 114 ntBASIC4.74□□□□□ -1.65
COL18A1P39060 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.74□□□□□ -1.65
COL18A1P39060 AC010655.1-201ENST00000449336 292 ntBASIC4.74□□□□□ -1.65
COL18A1P39060 U3.44-201ENST00000458938 192 ntBASIC4.74□□□□□ -1.65
COL18A1P39060 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.74□□□□□ -1.65
COL18A1P39060 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.74□□□□□ -1.65
COL18A1P39060 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL18A1P39060 BDP1P-201ENST00000582658 1990 ntBASIC4.74□□□□□ -1.65
COL18A1P39060 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
COL18A1P39060 AC120036.2-201ENST00000509729 1474 ntBASIC4.74□□□□□ -1.65
COL18A1P39060 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.74□□□□□ -1.65
COL18A1P39060 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL18A1P39060 LINC01109-201ENST00000603837 3081 ntBASIC4.74□□□□□ -1.65
COL18A1P39060 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.73□□□□□ -1.65
COL18A1P39060 NDUFB1P1-201ENST00000435191 180 ntBASIC4.73□□□□□ -1.65
COL18A1P39060 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.73□□□□□ -1.65
COL18A1P39060 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.73□□□□□ -1.65
COL18A1P39060 AC006445.1-201ENST00000491925 405 ntBASIC4.73□□□□□ -1.65
COL18A1P39060 FTH1P24-201ENST00000503502 462 ntBASIC4.73□□□□□ -1.65
COL18A1P39060 AC097462.2-201ENST00000504623 481 ntBASIC4.73□□□□□ -1.65
COL18A1P39060 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC4.73□□□□□ -1.65
COL18A1P39060 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.73□□□□□ -1.65
COL18A1P39060 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC4.73□□□□□ -1.65
COL18A1P39060 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.73□□□□□ -1.65
COL18A1P39060 AC127502.3-201ENST00000636170 1206 ntBASIC4.73□□□□□ -1.65
COL18A1P39060 RALGAPA1P1-201ENST00000443361 6232 ntBASIC4.73□□□□□ -1.65
COL18A1P39060 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL18A1P39060 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.73□□□□□ -1.65
COL18A1P39060 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.73□□□□□ -1.65
COL18A1P39060 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL18A1P39060 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL18A1P39060 AL442128.2-201ENST00000620246 1824 ntBASIC4.73□□□□□ -1.65
COL18A1P39060 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC4.73□□□□□ -1.65
COL18A1P39060 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL18A1P39060 MTCO1P45-201ENST00000431457 267 ntBASIC4.73□□□□□ -1.65
COL18A1P39060 ELOCP8-201ENST00000439309 332 ntBASIC4.73□□□□□ -1.65
COL18A1P39060 ELOCP15-201ENST00000442090 332 ntBASIC4.73□□□□□ -1.65
COL18A1P39060 RPL32P34-201ENST00000486380 400 ntBASIC4.73□□□□□ -1.65
COL18A1P39060 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.73□□□□□ -1.65
COL18A1P39060 AC005476.1-201ENST00000554427 397 ntBASIC4.73□□□□□ -1.65
COL18A1P39060 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.73□□□□□ -1.65
COL18A1P39060 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL18A1P39060 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
COL18A1P39060 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL18A1P39060 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL18A1P39060 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL18A1P39060 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
COL18A1P39060 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.72□□□□□ -1.65
COL18A1P39060 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
COL18A1P39060 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL18A1P39060 AC092435.3-201ENST00000565538 3654 ntBASIC4.72□□□□□ -1.65
COL18A1P39060 GNG5P1-201ENST00000255500 204 ntBASIC4.72□□□□□ -1.65
COL18A1P39060 U3.26-201ENST00000391236 204 ntBASIC4.72□□□□□ -1.65
COL18A1P39060 AL357075.1-201ENST00000404107 726 ntBASIC4.72□□□□□ -1.65
COL18A1P39060 EIF4EP1-201ENST00000422311 642 ntBASIC4.72□□□□□ -1.65
COL18A1P39060 AL671855.1-201ENST00000446875 1203 ntBASIC4.72□□□□□ -1.65
COL18A1P39060 ARL4AP1-201ENST00000503220 705 ntBASIC4.72□□□□□ -1.65
COL18A1P39060 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.72□□□□□ -1.65
COL18A1P39060 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL18A1P39060 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
COL18A1P39060 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.72□□□□□ -1.65
COL18A1P39060 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.72□□□□□ -1.65
COL18A1P39060 CKS1BP3-201ENST00000600888 237 ntBASIC4.72□□□□□ -1.65
COL18A1P39060 AC128687.2-201ENST00000609657 566 ntBASIC4.72□□□□□ -1.65
COL18A1P39060 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL18A1P39060 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL18A1P39060 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL18A1P39060 AC083837.1-201ENST00000565297 2994 ntBASIC4.72□□□□□ -1.65
COL18A1P39060 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
COL18A1P39060 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.65
COL18A1P39060 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
COL18A1P39060 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.71□□□□□ -1.65
COL18A1P39060 RPL23AP57-201ENST00000332361 466 ntBASIC4.71□□□□□ -1.66
COL18A1P39060 FRG1CP-201ENST00000358464 769 ntBASIC4.71□□□□□ -1.66
COL18A1P39060 RPL6P21-201ENST00000418672 846 ntBASIC4.71□□□□□ -1.66
COL18A1P39060 AJ239321.1-201ENST00000424255 564 ntBASIC4.71□□□□□ -1.66
COL18A1P39060 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.71□□□□□ -1.66
COL18A1P39060 AC098824.1-201ENST00000453565 980 ntBASIC4.71□□□□□ -1.66
COL18A1P39060 TRBV12-2-201ENST00000489763 344 ntBASIC4.71□□□□□ -1.66
COL18A1P39060 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC4.71□□□□□ -1.66
COL18A1P39060 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.71□□□□□ -1.66
COL18A1P39060 NCAPGP2-201ENST00000557911 754 ntBASIC4.71□□□□□ -1.66
COL18A1P39060 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC4.71□□□□□ -1.66
COL18A1P39060 AC026422.1-201ENST00000623961 452 ntBASIC4.71□□□□□ -1.66
COL18A1P39060 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC4.71□□□□□ -1.66
COL18A1P39060 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.71□□□□□ -1.66
COL18A1P39060 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL18A1P39060 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
COL18A1P39060 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.71□□□□□ -1.66
COL18A1P39060 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
COL18A1P39060 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL18A1P39060 RNU1-108P-201ENST00000362556 161 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 AL031121.1-201ENST00000406553 254 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 U3.39-201ENST00000408569 239 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 BX323014.1-201ENST00000412876 237 ntBASIC4.7□□□□□ -1.66
COL18A1P39060 LIPT1P1-201ENST00000415870 1186 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms