Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC4.31□□□□□ -1.72
PTPN4P29074 MTND2P8-201ENST00000450555 1025 ntBASIC4.31□□□□□ -1.72
PTPN4P29074 RPL23AP23-201ENST00000452590 471 ntBASIC4.31□□□□□ -1.72
PTPN4P29074 AL161747.1-201ENST00000480068 358 ntBASIC4.31□□□□□ -1.72
PTPN4P29074 COL6A4P2-205ENST00000509855 506 ntBASIC4.31□□□□□ -1.72
PTPN4P29074 IGLVIV-65-201ENST00000517313 360 ntBASIC4.31□□□□□ -1.72
PTPN4P29074 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
PTPN4P29074 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.31□□□□□ -1.72
PTPN4P29074 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
PTPN4P29074 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC4.31□□□□□ -1.72
PTPN4P29074 AC020914.4-201ENST00000597690 277 ntBASIC4.31□□□□□ -1.72
PTPN4P29074 AC005034.4-201ENST00000603612 899 ntBASIC4.31□□□□□ -1.72
PTPN4P29074 AC010680.3-201ENST00000604215 520 ntBASIC4.31□□□□□ -1.72
PTPN4P29074 AC079610.2-201ENST00000604818 690 ntBASIC4.31□□□□□ -1.72
PTPN4P29074 KATNBL1P5-201ENST00000605015 517 ntBASIC4.31□□□□□ -1.72
PTPN4P29074 AC004775.1-201ENST00000607389 753 ntBASIC4.31□□□□□ -1.72
PTPN4P29074 AL162574.2-201ENST00000614618 657 ntBASIC4.31□□□□□ -1.72
PTPN4P29074 AC068831.8-201ENST00000620171 435 ntBASIC4.31□□□□□ -1.72
PTPN4P29074 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
PTPN4P29074 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
PTPN4P29074 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
PTPN4P29074 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PTPN4P29074 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
PTPN4P29074 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PTPN4P29074 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.3□□□□□ -1.72
PTPN4P29074 OR6C69P-201ENST00000394268 893 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.3□□□□□ -1.72
PTPN4P29074 RPL23AP59-201ENST00000399415 461 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 HMGB1P13-201ENST00000406019 642 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 MIR1911-201ENST00000410783 80 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 UBE2V1P11-201ENST00000411559 285 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.3□□□□□ -1.72
PTPN4P29074 RPEP2-201ENST00000432149 701 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 AL035458.1-201ENST00000433096 585 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 AC011998.1-201ENST00000433403 117 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 CBX1P1-201ENST00000440184 427 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.3□□□□□ -1.72
PTPN4P29074 RN7SL303P-201ENST00000469773 251 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 RN7SL810P-201ENST00000493031 276 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.3□□□□□ -1.72
PTPN4P29074 OR8K2P-201ENST00000524645 927 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.3□□□□□ -1.72
PTPN4P29074 AL161713.1-201ENST00000555538 145 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.3□□□□□ -1.72
PTPN4P29074 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.3□□□□□ -1.72
PTPN4P29074 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.3□□□□□ -1.72
PTPN4P29074 MIR3939-201ENST00000582614 106 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.3□□□□□ -1.72
PTPN4P29074 AC067852.7-201ENST00000623270 535 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 AC073592.7-201ENST00000623659 507 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 AC090617.9-201ENST00000623751 147 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 AL353743.4-201ENST00000422653 1547 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PTPN4P29074 NOL8P1-201ENST00000508336 3529 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 AC100871.1-201ENST00000507871 1456 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 AC027287.1-201ENST00000553115 1453 ntBASIC4.3□□□□□ -1.72
PTPN4P29074 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.3□□□□□ -1.72
PTPN4P29074 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
PTPN4P29074 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN4P29074 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN4P29074 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN4P29074 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN4P29074 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.29□□□□□ -1.72
PTPN4P29074 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN4P29074 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN4P29074 LINC00622-201ENST00000562811 1570 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN4P29074 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN4P29074 MIR708-201ENST00000390708 88 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.29□□□□□ -1.72
PTPN4P29074 AL031736.2-201ENST00000426573 787 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.29□□□□□ -1.72
PTPN4P29074 AL691517.1-201ENST00000440833 1235 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 RPL23AP93-201ENST00000440847 484 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 NPM1P17-201ENST00000479221 602 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 AC104687.1-201ENST00000485829 412 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN4P29074 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.29□□□□□ -1.72
PTPN4P29074 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.29□□□□□ -1.72
PTPN4P29074 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
PTPN4P29074 RN7SKP82-201ENST00000516786 223 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.29□□□□□ -1.72
PTPN4P29074 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.29□□□□□ -1.72
PTPN4P29074 OR4A2P-201ENST00000527276 913 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.29□□□□□ -1.72
PTPN4P29074 AP002812.4-201ENST00000532139 286 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.29□□□□□ -1.72
PTPN4P29074 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.29□□□□□ -1.72
PTPN4P29074 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.29□□□□□ -1.72
PTPN4P29074 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN4P29074 AL020997.2-201ENST00000602607 184 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.29□□□□□ -1.72
PTPN4P29074 AC138907.10-201ENST00000623708 983 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 LINC01808-202ENST00000641680 1116 ntBASIC4.29□□□□□ -1.72
PTPN4P29074 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.29□□□□□ -1.72
PTPN4P29074 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
PTPN4P29074 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.29□□□□□ -1.72
PTPN4P29074 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.29□□□□□ -1.72
PTPN4P29074 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms