Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC5.47□□□□□ -1.53
COL3A1P02461 TRIM60P5Y-201ENST00000413946 574 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC5.47□□□□□ -1.53
COL3A1P02461 BMS1P19-201ENST00000433925 393 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC5.47□□□□□ -1.53
COL3A1P02461 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC5.47□□□□□ -1.53
COL3A1P02461 AL359073.1-201ENST00000448036 403 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 OR6C72P-201ENST00000451403 892 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC5.47□□□□□ -1.53
COL3A1P02461 NPM1P17-201ENST00000479221 602 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL3A1P02461 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC5.47□□□□□ -1.53
COL3A1P02461 ATG10-AS1-201ENST00000504846 648 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 AC010486.2-201ENST00000505572 483 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 RNU6-1102P-201ENST00000516149 96 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 AC104997.1-201ENST00000519761 717 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 AC118942.1-201ENST00000529674 1035 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 AC063950.1-201ENST00000552036 308 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 AC009097.3-201ENST00000563557 1018 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC5.47□□□□□ -1.53
COL3A1P02461 NBR2-204ENST00000587322 63 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC5.47□□□□□ -1.53
COL3A1P02461 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.47□□□□□ -1.53
COL3A1P02461 AC023043.4-201ENST00000612081 449 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 RNU6-1192P-201ENST00000612197 107 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 AC090246.1-201ENST00000616499 426 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 RNU6-489P-201ENST00000618289 107 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC5.47□□□□□ -1.53
COL3A1P02461 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.47□□□□□ -1.53
COL3A1P02461 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL3A1P02461 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL3A1P02461 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
COL3A1P02461 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
COL3A1P02461 DDX18P4-201ENST00000511690 1966 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
COL3A1P02461 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC5.47□□□□□ -1.53
COL3A1P02461 AP000526.1-201ENST00000603308 1388 ntBASIC5.47□□□□□ -1.53
COL3A1P02461 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL3A1P02461 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.53
COL3A1P02461 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
COL3A1P02461 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC5.46□□□□□ -1.53
COL3A1P02461 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
COL3A1P02461 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
COL3A1P02461 RNU1-15P-201ENST00000353977 144 ntBASIC5.46□□□□□ -1.53
COL3A1P02461 RNU4-28P-201ENST00000364739 141 ntBASIC5.46□□□□□ -1.53
COL3A1P02461 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
COL3A1P02461 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.46□□□□□ -1.53
COL3A1P02461 TRGV5P-201ENST00000419915 354 ntBASIC5.46□□□□□ -1.53
COL3A1P02461 TCEA1P2-201ENST00000420496 906 ntBASIC5.46□□□□□ -1.53
COL3A1P02461 SNRPFP2-201ENST00000440710 251 ntBASIC5.46□□□□□ -1.53
COL3A1P02461 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC5.46□□□□□ -1.53
COL3A1P02461 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC5.46□□□□□ -1.53
COL3A1P02461 PSMC1P13-201ENST00000458195 985 ntBASIC5.46□□□□□ -1.53
COL3A1P02461 OR2A20P-203ENST00000498397 1268 ntBASIC5.46□□□□□ -1.53
COL3A1P02461 LAMTOR3P2-201ENST00000504479 232 ntBASIC5.46□□□□□ -1.53
COL3A1P02461 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC5.46□□□□□ -1.53
COL3A1P02461 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.46□□□□□ -1.53
COL3A1P02461 AC020593.1-201ENST00000507399 299 ntBASIC5.46□□□□□ -1.53
COL3A1P02461 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC5.46□□□□□ -1.53
COL3A1P02461 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC5.46□□□□□ -1.53
COL3A1P02461 RNU6-352P-201ENST00000516908 107 ntBASIC5.46□□□□□ -1.53
COL3A1P02461 RGS5-218ENST00000526176 574 ntTSL 4 BASIC5.46□□□□□ -1.53
COL3A1P02461 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC5.46□□□□□ -1.53
COL3A1P02461 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.46□□□□□ -1.53
COL3A1P02461 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.46□□□□□ -1.53
COL3A1P02461 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC5.46□□□□□ -1.53
COL3A1P02461 AC106785.1-201ENST00000565935 262 ntBASIC5.46□□□□□ -1.53
COL3A1P02461 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC5.46□□□□□ -1.53
COL3A1P02461 AL606834.3-201ENST00000602615 496 ntBASIC5.46□□□□□ -1.53
COL3A1P02461 OR51C1P-201ENST00000608504 942 ntBASIC5.46□□□□□ -1.53
COL3A1P02461 AC245100.7-201ENST00000609678 442 ntBASIC5.46□□□□□ -1.53
COL3A1P02461 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.46□□□□□ -1.53
COL3A1P02461 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
COL3A1P02461 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.46□□□□□ -1.53
COL3A1P02461 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
COL3A1P02461 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL3A1P02461 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
COL3A1P02461 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL3A1P02461 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.46□□□□□ -1.54
COL3A1P02461 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL3A1P02461 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
COL3A1P02461 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
COL3A1P02461 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL3A1P02461 AC023632.6-201ENST00000624338 2177 ntBASIC5.46□□□□□ -1.54
COL3A1P02461 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
COL3A1P02461 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL3A1P02461 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL3A1P02461 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL3A1P02461 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL3A1P02461 SNORD116-4-201ENST00000384733 96 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 HDGFP1-201ENST00000405943 252 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 RNA5SP146-201ENST00000410743 123 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC5.45□□□□□ -1.54
COL3A1P02461 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC5.45□□□□□ -1.54
COL3A1P02461 AL158073.1-201ENST00000426848 1104 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AC006994.1-201ENST00000438212 839 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC5.45□□□□□ -1.54
COL3A1P02461 AL031313.1-201ENST00000448435 256 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 AC006517.1-201ENST00000480485 328 ntBASIC5.45□□□□□ -1.54
COL3A1P02461 ARL4AP1-201ENST00000503220 705 ntBASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms