Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MAPK10-253ENST00000641010 4072 ntBASIC4.36□□□□□ -1.71
MSH4O15457 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.36□□□□□ -1.71
MSH4O15457 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
MSH4O15457 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
MSH4O15457 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSH4O15457 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSH4O15457 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSH4O15457 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
MSH4O15457 SPATA2P1-201ENST00000431223 2055 ntBASIC4.35□□□□□ -1.71
MSH4O15457 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSH4O15457 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSH4O15457 SNORA3.3-201ENST00000408712 125 ntBASIC4.35□□□□□ -1.71
MSH4O15457 CYCSP19-201ENST00000411715 316 ntBASIC4.35□□□□□ -1.71
MSH4O15457 AL606490.7-201ENST00000433136 191 ntBASIC4.35□□□□□ -1.71
MSH4O15457 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.35□□□□□ -1.71
MSH4O15457 AL353898.1-201ENST00000444055 238 ntBASIC4.35□□□□□ -1.71
MSH4O15457 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSH4O15457 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.35□□□□□ -1.71
MSH4O15457 AC113430.1-201ENST00000506872 718 ntBASIC4.35□□□□□ -1.71
MSH4O15457 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.35□□□□□ -1.71
MSH4O15457 HMGB1P47-201ENST00000511281 589 ntBASIC4.35□□□□□ -1.71
MSH4O15457 AC026726.1-201ENST00000512859 601 ntBASIC4.35□□□□□ -1.71
MSH4O15457 AC093853.1-201ENST00000515689 483 ntBASIC4.35□□□□□ -1.71
MSH4O15457 RN7SKP141-201ENST00000516167 338 ntBASIC4.35□□□□□ -1.71
MSH4O15457 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.35□□□□□ -1.71
MSH4O15457 EIF4A2P3-201ENST00000525903 1055 ntBASIC4.35□□□□□ -1.71
MSH4O15457 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC4.35□□□□□ -1.71
MSH4O15457 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
MSH4O15457 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.35□□□□□ -1.71
MSH4O15457 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.35□□□□□ -1.71
MSH4O15457 C1GALT1P1-201ENST00000548895 1089 ntBASIC4.35□□□□□ -1.71
MSH4O15457 AC087499.8-201ENST00000578406 226 ntBASIC4.35□□□□□ -1.71
MSH4O15457 AC009237.17-201ENST00000618111 748 ntBASIC4.35□□□□□ -1.71
MSH4O15457 AC145207.9-201ENST00000623802 325 ntBASIC4.35□□□□□ -1.71
MSH4O15457 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.35□□□□□ -1.71
MSH4O15457 OR5AC4P-202ENST00000642086 985 ntBASIC4.35□□□□□ -1.71
MSH4O15457 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
MSH4O15457 UBE3AP2-201ENST00000429033 2259 ntBASIC4.35□□□□□ -1.71
MSH4O15457 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.35□□□□□ -1.71
MSH4O15457 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSH4O15457 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
MSH4O15457 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
MSH4O15457 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.34□□□□□ -1.71
MSH4O15457 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
MSH4O15457 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
MSH4O15457 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.71
MSH4O15457 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
MSH4O15457 SNORD74.4-201ENST00000364129 80 ntBASIC4.34□□□□□ -1.71
MSH4O15457 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC4.34□□□□□ -1.71
MSH4O15457 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.34□□□□□ -1.71
MSH4O15457 RPS24P12-201ENST00000402084 394 ntBASIC4.34□□□□□ -1.71
MSH4O15457 RN7SKP159-201ENST00000410657 292 ntBASIC4.34□□□□□ -1.71
MSH4O15457 RPS20P25-201ENST00000412447 352 ntBASIC4.34□□□□□ -1.71
MSH4O15457 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
MSH4O15457 AL445528.1-201ENST00000426330 420 ntBASIC4.34□□□□□ -1.71
MSH4O15457 OR4F13P-201ENST00000428478 931 ntBASIC4.34□□□□□ -1.71
MSH4O15457 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC4.34□□□□□ -1.71
MSH4O15457 CDC27P1-201ENST00000445384 715 ntBASIC4.34□□□□□ -1.71
MSH4O15457 RPL7L1P1-201ENST00000448259 785 ntBASIC4.34□□□□□ -1.71
MSH4O15457 AL627224.1-201ENST00000448334 444 ntBASIC4.34□□□□□ -1.71
MSH4O15457 EIF2S2P5-201ENST00000457635 968 ntBASIC4.34□□□□□ -1.71
MSH4O15457 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.34□□□□□ -1.71
MSH4O15457 RPS20P21-201ENST00000466859 343 ntBASIC4.34□□□□□ -1.71
MSH4O15457 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.34□□□□□ -1.71
MSH4O15457 AC021087.2-201ENST00000504656 1203 ntBASIC4.34□□□□□ -1.71
MSH4O15457 MTND4LP31-201ENST00000514859 294 ntBASIC4.34□□□□□ -1.71
MSH4O15457 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.34□□□□□ -1.71
MSH4O15457 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.34□□□□□ -1.71
MSH4O15457 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.34□□□□□ -1.71
MSH4O15457 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.34□□□□□ -1.71
MSH4O15457 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.34□□□□□ -1.71
MSH4O15457 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
MSH4O15457 AP004372.1-201ENST00000604842 844 ntBASIC4.34□□□□□ -1.71
MSH4O15457 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
MSH4O15457 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
MSH4O15457 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
MSH4O15457 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
MSH4O15457 LINC00216-201ENST00000623548 1126 ntBASIC4.34□□□□□ -1.71
MSH4O15457 AP003499.2-201ENST00000624100 483 ntBASIC4.34□□□□□ -1.71
MSH4O15457 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.34□□□□□ -1.71
MSH4O15457 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.34□□□□□ -1.71
MSH4O15457 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.34□□□□□ -1.71
MSH4O15457 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.34□□□□□ -1.71
MSH4O15457 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
MSH4O15457 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
MSH4O15457 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.34□□□□□ -1.71
MSH4O15457 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.34□□□□□ -1.71
MSH4O15457 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.34□□□□□ -1.71
MSH4O15457 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.34□□□□□ -1.71
MSH4O15457 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
MSH4O15457 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.34□□□□□ -1.72
MSH4O15457 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
MSH4O15457 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSH4O15457 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSH4O15457 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSH4O15457 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.33□□□□□ -1.72
MSH4O15457 CASC19-284ENST00000642142 1868 ntBASIC4.33□□□□□ -1.72
MSH4O15457 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.33□□□□□ -1.72
MSH4O15457 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSH4O15457 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms