Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AL442163.2-201ENST00000553912 710 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 RN7SL802P-201ENST00000577858 299 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 STMN1P1-201ENST00000617809 440 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 SAGE4P-201ENST00000442271 3381 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AL133383.2-201ENST00000622958 2336 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 SNORD74.4-201ENST00000364129 80 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 RNA5SP513-201ENST00000364648 118 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 SNORD6-201ENST00000365444 73 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 RNU1-82P-201ENST00000390851 165 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AL355379.1-201ENST00000405542 640 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 FCF1P5-201ENST00000406490 482 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 RNU2-37P-201ENST00000410695 177 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AC114755.2-201ENST00000413520 361 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AL807761.1-201ENST00000417622 171 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AL645608.4-201ENST00000423619 154 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 BX119904.1-201ENST00000432026 348 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 RHOT1P3-201ENST00000436571 331 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AL590399.6-201ENST00000446396 307 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 ZFRP1-201ENST00000457579 2970 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AC098799.3-201ENST00000506095 438 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 RNU1-6P-201ENST00000516290 144 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AC027104.1-201ENST00000563702 681 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 OR1AB1P-201ENST00000585564 761 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AC010928.3-201ENST00000587712 541 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AC125494.3-201ENST00000602759 455 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AC073091.2-201ENST00000603205 907 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AL139395.1-201ENST00000603662 160 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AC015802.5-201ENST00000607478 399 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 OR7A19P-201ENST00000608051 733 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AC007497.1-201ENST00000610421 561 ntBASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
ZNF540Q8NDQ6 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 ASNSP1-204ENST00000641977 1664 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 RNVU1-6-201ENST00000364688 164 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 RNU1-63P-201ENST00000383902 164 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 SNORA56-201ENST00000383966 129 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 RPS3AP23-201ENST00000401762 784 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 DNAJC19P7-201ENST00000428811 344 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 RPS27P5-201ENST00000444247 244 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 Z77249.1-201ENST00000444622 1175 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AC073264.2-201ENST00000448886 166 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 MTND3P4-201ENST00000453537 303 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 HMGN2P7-201ENST00000456186 273 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 TMEM248P1-201ENST00000510579 951 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 RAB9BP1-201ENST00000519581 626 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 BUD31P1-201ENST00000521828 359 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 GCSHP4-201ENST00000538792 439 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AP003717.3-201ENST00000544832 1180 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AC133555.2-201ENST00000550213 292 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AC233266.2-201ENST00000567067 528 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AC090616.5-202ENST00000582111 297 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AC022726.1-201ENST00000587475 207 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 KATNBL1P1-201ENST00000605192 748 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AP002360.3-201ENST00000607673 710 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms