Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SNORA77.2-201ENST00000408571 112 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AC245096.1-201ENST00000413104 546 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AL096829.1-201ENST00000413677 457 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AL353193.1-201ENST00000421444 268 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AC007562.1-201ENST00000421819 517 ntBASIC5.66□□□□□ -1.5
RNF4P78317 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.66□□□□□ -1.5
RNF4P78317 RPL12P12-201ENST00000424633 501 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AL513185.2-201ENST00000425543 193 ntBASIC5.66□□□□□ -1.5
RNF4P78317 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
RNF4P78317 AP000936.3-201ENST00000438127 255 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.66□□□□□ -1.5
RNF4P78317 AL138899.2-201ENST00000439139 499 ntBASIC5.66□□□□□ -1.5
RNF4P78317 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC5.66□□□□□ -1.5
RNF4P78317 SDCBPP1-201ENST00000440192 890 ntBASIC5.66□□□□□ -1.5
RNF4P78317 ATP5LP2-201ENST00000440646 311 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AC023274.2-201ENST00000445264 521 ntBASIC5.66□□□□□ -1.5
RNF4P78317 FTLP8-201ENST00000446770 267 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC5.66□□□□□ -1.5
RNF4P78317 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC5.66□□□□□ -1.5
RNF4P78317 LSM3P4-201ENST00000502948 309 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC5.66□□□□□ -1.5
RNF4P78317 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC5.66□□□□□ -1.5
RNF4P78317 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.66□□□□□ -1.5
RNF4P78317 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.66□□□□□ -1.5
RNF4P78317 FAU-203ENST00000525297 355 ntTSL 5 BASIC5.66□□□□□ -1.5
RNF4P78317 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC5.66□□□□□ -1.5
RNF4P78317 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.66□□□□□ -1.5
RNF4P78317 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC5.66□□□□□ -1.5
RNF4P78317 CYCSP38-201ENST00000559840 322 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AC090312.1-201ENST00000580637 348 ntBASIC5.66□□□□□ -1.5
RNF4P78317 RNU4ATAC-201ENST00000580972 127 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.66□□□□□ -1.5
RNF4P78317 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.66□□□□□ -1.5
RNF4P78317 NRBF2P5-201ENST00000603087 788 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AC007038.2-201ENST00000608095 740 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AC064836.2-201ENST00000609491 462 ntBASIC5.66□□□□□ -1.5
RNF4P78317 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
RNF4P78317 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AC126177.8-201ENST00000618339 1015 ntBASIC5.66□□□□□ -1.5
RNF4P78317 AC073488.3-201ENST00000631611 778 ntBASIC5.66□□□□□ -1.5
RNF4P78317 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
RNF4P78317 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
RNF4P78317 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC5.66□□□□□ -1.5
RNF4P78317 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
RNF4P78317 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
RNF4P78317 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
RNF4P78317 AP005435.3-201ENST00000531260 3198 ntBASIC5.66□□□□□ -1.5
RNF4P78317 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC5.66□□□□□ -1.5
RNF4P78317 AC140134.1-201ENST00000511830 3544 ntBASIC5.66□□□□□ -1.5
RNF4P78317 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.66□□□□□ -1.5
RNF4P78317 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
RNF4P78317 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
RNF4P78317 AC008627.1-201ENST00000517511 1704 ntBASIC5.65□□□□□ -1.5
RNF4P78317 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
RNF4P78317 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.65□□□□□ -1.5
RNF4P78317 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.65□□□□□ -1.5
RNF4P78317 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
RNF4P78317 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
RNF4P78317 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC5.65□□□□□ -1.5
RNF4P78317 AC007342.5-201ENST00000571340 2142 ntBASIC5.65□□□□□ -1.5
RNF4P78317 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
RNF4P78317 CCT4P2-201ENST00000233836 1548 ntBASIC5.65□□□□□ -1.5
RNF4P78317 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
RNF4P78317 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.65□□□□□ -1.5
RNF4P78317 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
RNF4P78317 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
RNF4P78317 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
RNF4P78317 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
RNF4P78317 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
RNF4P78317 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
RNF4P78317 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC5.65□□□□□ -1.5
RNF4P78317 RNU4-73P-201ENST00000363164 141 ntBASIC5.65□□□□□ -1.5
RNF4P78317 RNU105B-201ENST00000364478 208 ntBASIC5.65□□□□□ -1.5
RNF4P78317 Y_RNA.529-201ENST00000384586 119 ntBASIC5.65□□□□□ -1.5
RNF4P78317 RNU11-201ENST00000387069 134 ntBASIC5.65□□□□□ -1.5
RNF4P78317 PRRC2CP1-201ENST00000404428 159 ntBASIC5.65□□□□□ -1.5
RNF4P78317 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
RNF4P78317 AL603766.1-201ENST00000407763 664 ntBASIC5.65□□□□□ -1.5
RNF4P78317 AC116036.1-201ENST00000412199 367 ntBASIC5.65□□□□□ -1.5
RNF4P78317 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC5.65□□□□□ -1.5
RNF4P78317 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.65□□□□□ -1.5
RNF4P78317 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.65□□□□□ -1.5
RNF4P78317 RPS15AP30-201ENST00000420976 390 ntBASIC5.65□□□□□ -1.5
RNF4P78317 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC5.65□□□□□ -1.5
RNF4P78317 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC5.65□□□□□ -1.5
RNF4P78317 AC115283.1-201ENST00000427353 400 ntBASIC5.65□□□□□ -1.5
RNF4P78317 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC5.65□□□□□ -1.5
RNF4P78317 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC5.65□□□□□ -1.5
RNF4P78317 CBX1P1-201ENST00000440184 427 ntBASIC5.65□□□□□ -1.5
RNF4P78317 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC5.65□□□□□ -1.5
RNF4P78317 AC079922.1-201ENST00000443291 359 ntBASIC5.65□□□□□ -1.5
RNF4P78317 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
RNF4P78317 RPL23AP60-201ENST00000450011 454 ntBASIC5.65□□□□□ -1.5
RNF4P78317 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC5.65□□□□□ -1.5
RNF4P78317 AC112187.1-201ENST00000455837 479 ntBASIC5.65□□□□□ -1.5
RNF4P78317 RPS20P24-201ENST00000457473 361 ntBASIC5.65□□□□□ -1.5
RNF4P78317 RPL17P2-201ENST00000491913 451 ntBASIC5.65□□□□□ -1.5
RNF4P78317 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.65□□□□□ -1.5
RNF4P78317 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.65□□□□□ -1.5
RNF4P78317 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms