Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC6.16□□□□□ -1.42
LIG3P49916 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 AC002525.1-201ENST00000624392 1622 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AC092162.3-201ENST00000624511 1624 ntBASIC6.16□□□□□ -1.42
LIG3P49916 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC6.16□□□□□ -1.42
LIG3P49916 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 AC134882.1-201ENST00000603738 1676 ntBASIC6.16□□□□□ -1.42
LIG3P49916 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC6.16□□□□□ -1.42
LIG3P49916 AL161756.3-201ENST00000641216 2071 ntBASIC6.16□□□□□ -1.42
LIG3P49916 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
LIG3P49916 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG3P49916 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.15□□□□□ -1.42
LIG3P49916 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG3P49916 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG3P49916 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
LIG3P49916 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
LIG3P49916 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
LIG3P49916 AL022311.1-201ENST00000623726 19416 ntBASIC6.15□□□□□ -1.42
LIG3P49916 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG3P49916 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG3P49916 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
LIG3P49916 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG3P49916 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG3P49916 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
LIG3P49916 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
LIG3P49916 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG3P49916 RN7SKP275-201ENST00000364626 301 ntBASIC6.15□□□□□ -1.42
LIG3P49916 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
LIG3P49916 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
LIG3P49916 CALM2P3-201ENST00000400429 449 ntBASIC6.15□□□□□ -1.42
LIG3P49916 RNU4-55P-201ENST00000410731 137 ntBASIC6.15□□□□□ -1.42
LIG3P49916 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG3P49916 RPS7P8-201ENST00000418311 581 ntBASIC6.15□□□□□ -1.42
LIG3P49916 AC008280.1-201ENST00000418851 412 ntBASIC6.15□□□□□ -1.42
LIG3P49916 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.15□□□□□ -1.42
LIG3P49916 COX6CP17-201ENST00000421389 185 ntBASIC6.15□□□□□ -1.42
LIG3P49916 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG3P49916 NANOGP6-201ENST00000429190 847 ntBASIC6.15□□□□□ -1.42
LIG3P49916 ATP5LP2-201ENST00000440646 311 ntBASIC6.15□□□□□ -1.42
LIG3P49916 RPS4XP4-201ENST00000443195 763 ntBASIC6.15□□□□□ -1.42
LIG3P49916 HMGN1P2-201ENST00000445197 310 ntBASIC6.15□□□□□ -1.42
LIG3P49916 AC114755.5-201ENST00000447760 831 ntBASIC6.15□□□□□ -1.42
LIG3P49916 DPPA3P1-201ENST00000448050 469 ntBASIC6.15□□□□□ -1.42
LIG3P49916 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG3P49916 PPIAP27-201ENST00000453800 265 ntBASIC6.15□□□□□ -1.42
LIG3P49916 AC099563.1-201ENST00000456086 418 ntBASIC6.15□□□□□ -1.42
LIG3P49916 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
LIG3P49916 KCTD9P5-201ENST00000504141 1170 ntBASIC6.15□□□□□ -1.42
LIG3P49916 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
LIG3P49916 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
LIG3P49916 SAP18P1-201ENST00000512058 390 ntBASIC6.15□□□□□ -1.42
LIG3P49916 PRMT5P1-201ENST00000514351 598 ntBASIC6.15□□□□□ -1.42
LIG3P49916 AC046134.1-201ENST00000514454 666 ntBASIC6.15□□□□□ -1.42
LIG3P49916 SNORA20.3-201ENST00000516880 132 ntBASIC6.15□□□□□ -1.42
LIG3P49916 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG3P49916 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG3P49916 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC6.15□□□□□ -1.42
LIG3P49916 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG3P49916 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG3P49916 AL389895.1-201ENST00000554127 252 ntBASIC6.15□□□□□ -1.42
LIG3P49916 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG3P49916 HMGB1P33-201ENST00000563485 527 ntBASIC6.15□□□□□ -1.42
LIG3P49916 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC6.15□□□□□ -1.42
LIG3P49916 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG3P49916 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC6.15□□□□□ -1.42
LIG3P49916 MIR4433B-201ENST00000581329 102 ntBASIC6.15□□□□□ -1.42
LIG3P49916 MIR4637-201ENST00000582405 84 ntBASIC6.15□□□□□ -1.42
LIG3P49916 FGF7P1-201ENST00000582820 288 ntBASIC6.15□□□□□ -1.42
LIG3P49916 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC6.15□□□□□ -1.42
LIG3P49916 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC6.15□□□□□ -1.42
LIG3P49916 AC068768.2-201ENST00000602352 343 ntBASIC6.15□□□□□ -1.42
LIG3P49916 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
LIG3P49916 AC008277.2-201ENST00000605196 797 ntBASIC6.15□□□□□ -1.42
LIG3P49916 AP005264.7-201ENST00000625003 745 ntBASIC6.15□□□□□ -1.42
LIG3P49916 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.15□□□□□ -1.43
LIG3P49916 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC6.15□□□□□ -1.43
LIG3P49916 AC024587.1-201ENST00000505925 2157 ntBASIC6.15□□□□□ -1.43
LIG3P49916 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.15□□□□□ -1.43
LIG3P49916 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
LIG3P49916 HDAC1P2-201ENST00000453661 1398 ntBASIC6.15□□□□□ -1.43
LIG3P49916 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC6.15□□□□□ -1.43
LIG3P49916 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
LIG3P49916 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
LIG3P49916 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.43
LIG3P49916 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
LIG3P49916 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC6.15□□□□□ -1.43
LIG3P49916 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
LIG3P49916 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.14□□□□□ -1.43
LIG3P49916 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
LIG3P49916 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC6.14□□□□□ -1.43
LIG3P49916 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
LIG3P49916 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
LIG3P49916 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
LIG3P49916 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
LIG3P49916 RNU6-777P-201ENST00000364265 104 ntBASIC6.14□□□□□ -1.43
LIG3P49916 RNU6-876P-201ENST00000391295 104 ntBASIC6.14□□□□□ -1.43
LIG3P49916 HMGB1P17-201ENST00000403495 628 ntBASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms