Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
SMARCA1P28370 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC5.54□□□□□ -1.52
SMARCA1P28370 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC5.54□□□□□ -1.52
SMARCA1P28370 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SMARCA1P28370 Z95331.1-201ENST00000623075 23112 ntBASIC5.54□□□□□ -1.52
SMARCA1P28370 AC120338.1-201ENST00000625074 1541 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SMARCA1P28370 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SMARCA1P28370 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.53□□□□□ -1.52
SMARCA1P28370 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SMARCA1P28370 AP005901.5-201ENST00000545779 1796 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
SMARCA1P28370 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SMARCA1P28370 RN7SKP224-201ENST00000364140 325 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC5.53□□□□□ -1.52
SMARCA1P28370 RSL24D1P4-201ENST00000400938 484 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.53□□□□□ -1.52
SMARCA1P28370 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.53□□□□□ -1.52
SMARCA1P28370 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SMARCA1P28370 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.53□□□□□ -1.52
SMARCA1P28370 PTP4A1P5-201ENST00000420305 455 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 AC092013.1-201ENST00000438795 332 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.53□□□□□ -1.52
SMARCA1P28370 AC010733.1-201ENST00000451515 401 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5.53□□□□□ -1.52
SMARCA1P28370 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.53□□□□□ -1.52
SMARCA1P28370 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SMARCA1P28370 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC5.53□□□□□ -1.52
SMARCA1P28370 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.53□□□□□ -1.52
SMARCA1P28370 HMGB1P23-201ENST00000518743 568 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 IGHVIII-38-1-201ENST00000521454 282 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 C1GALT1P3-201ENST00000522049 819 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 MTCO1P47-201ENST00000523889 1271 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC5.53□□□□□ -1.52
SMARCA1P28370 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC5.53□□□□□ -1.52
SMARCA1P28370 AC093249.4-201ENST00000564755 259 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 MIR4666A-201ENST00000580160 79 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC5.53□□□□□ -1.52
SMARCA1P28370 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.53□□□□□ -1.52
SMARCA1P28370 MRPS35P3-201ENST00000603189 709 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 AC123786.2-201ENST00000603459 275 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 DPRXP5-201ENST00000604662 539 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 AC010200.2-201ENST00000605098 235 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 AC099676.1-201ENST00000608886 657 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 MIR6780A-201ENST00000615089 68 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC5.53□□□□□ -1.52
SMARCA1P28370 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.53□□□□□ -1.52
SMARCA1P28370 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
SMARCA1P28370 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SMARCA1P28370 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SMARCA1P28370 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.53□□□□□ -1.52
SMARCA1P28370 AC104118.1-201ENST00000607625 1589 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
SMARCA1P28370 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
SMARCA1P28370 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SMARCA1P28370 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
SMARCA1P28370 AP000756.2-201ENST00000624168 2567 ntBASIC5.53□□□□□ -1.52
SMARCA1P28370 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.53□□□□□ -1.52
SMARCA1P28370 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SMARCA1P28370 MAPK10-304ENST00000641341 3984 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
SMARCA1P28370 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.52□□□□□ -1.53
SMARCA1P28370 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.52□□□□□ -1.53
SMARCA1P28370 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
SMARCA1P28370 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.52□□□□□ -1.53
SMARCA1P28370 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
SMARCA1P28370 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
SMARCA1P28370 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
SMARCA1P28370 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SMARCA1P28370 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SMARCA1P28370 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SMARCA1P28370 SNORD116-1-201ENST00000384335 95 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 AL590762.2-201ENST00000395798 571 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 NCSTNP1-201ENST00000406229 144 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 SNORA11C-201ENST00000408532 129 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 AC114814.2-201ENST00000419195 485 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC5.52□□□□□ -1.53
SMARCA1P28370 MFSD13B-201ENST00000420133 1290 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 RGS17P1-201ENST00000423358 553 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 CKS1BP6-201ENST00000424932 240 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 OR2B7P-201ENST00000429302 934 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 MTND1P32-201ENST00000433043 938 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 GTF2IP7-202ENST00000436677 309 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC5.52□□□□□ -1.53
SMARCA1P28370 AC016831.4-201ENST00000438302 307 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 AC092393.1-201ENST00000439625 742 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 RPL36AP15-201ENST00000444514 266 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC5.52□□□□□ -1.53
SMARCA1P28370 AC126121.1-201ENST00000482313 553 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SMARCA1P28370 AL035404.1-201ENST00000497982 568 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC5.52□□□□□ -1.53
SMARCA1P28370 AC010285.3-201ENST00000511668 676 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 NDUFB4P12-201ENST00000513465 390 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 OR7H2P-201ENST00000513483 306 ntBASIC5.52□□□□□ -1.53
SMARCA1P28370 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.52□□□□□ -1.53
SMARCA1P28370 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC5.52□□□□□ -1.53
SMARCA1P28370 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SMARCA1P28370 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 163.8 ms