Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 MTCO3P2-201ENST00000457365 171 ntBASIC6.26□□□□□ -1.41
MSX1P28360 AL162395.1-201ENST00000457882 422 ntBASIC6.26□□□□□ -1.41
MSX1P28360 AL049874.2-201ENST00000492636 288 ntBASIC6.26□□□□□ -1.41
MSX1P28360 AC015911.1-201ENST00000495111 156 ntBASIC6.26□□□□□ -1.41
MSX1P28360 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX1P28360 AC021146.1-201ENST00000511202 716 ntBASIC6.26□□□□□ -1.41
MSX1P28360 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX1P28360 AP005435.4-201ENST00000529514 284 ntBASIC6.26□□□□□ -1.41
MSX1P28360 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC6.26□□□□□ -1.41
MSX1P28360 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX1P28360 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC6.26□□□□□ -1.41
MSX1P28360 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX1P28360 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX1P28360 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
MSX1P28360 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX1P28360 AC069061.3-201ENST00000582254 823 ntBASIC6.26□□□□□ -1.41
MSX1P28360 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC6.26□□□□□ -1.41
MSX1P28360 RNU6-84P-201ENST00000607737 102 ntBASIC6.26□□□□□ -1.41
MSX1P28360 uc_338.11-201ENST00000619132 160 ntBASIC6.26□□□□□ -1.41
MSX1P28360 MRPL57P3-201ENST00000619218 176 ntBASIC6.26□□□□□ -1.41
MSX1P28360 LRRC37A12P-201ENST00000454917 1801 ntBASIC6.26□□□□□ -1.41
MSX1P28360 XPOTP1-201ENST00000443317 2398 ntBASIC6.26□□□□□ -1.41
MSX1P28360 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 SELE-204ENST00000367776 3576 ntTSL 5 BASIC6.26□□□□□ -1.41
MSX1P28360 SELE-205ENST00000367777 3576 ntTSL 5 BASIC6.26□□□□□ -1.41
MSX1P28360 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC6.26□□□□□ -1.41
MSX1P28360 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX1P28360 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC6.26□□□□□ -1.41
MSX1P28360 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX1P28360 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX1P28360 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
MSX1P28360 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC6.26□□□□□ -1.41
MSX1P28360 SNX18P3-202ENST00000565670 1750 ntBASIC6.26□□□□□ -1.41
MSX1P28360 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
MSX1P28360 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC6.26□□□□□ -1.41
MSX1P28360 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
MSX1P28360 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 MFSD8-217ENST00000641178 4374 ntBASIC6.25□□□□□ -1.41
MSX1P28360 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC6.25□□□□□ -1.41
MSX1P28360 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
MSX1P28360 AP000866.6-201ENST00000638898 3579 ntBASIC6.25□□□□□ -1.41
MSX1P28360 AP002800.1-201ENST00000624982 2225 ntBASIC6.25□□□□□ -1.41
MSX1P28360 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
MSX1P28360 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
MSX1P28360 RNU6-1115P-201ENST00000362490 106 ntBASIC6.25□□□□□ -1.41
MSX1P28360 RNU6-552P-201ENST00000362869 119 ntBASIC6.25□□□□□ -1.41
MSX1P28360 RN7SKP191-201ENST00000364713 306 ntBASIC6.25□□□□□ -1.41
MSX1P28360 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 RNA5SP176-201ENST00000390956 110 ntBASIC6.25□□□□□ -1.41
MSX1P28360 EIF5P1-201ENST00000400019 1231 ntBASIC6.25□□□□□ -1.41
MSX1P28360 AL353133.1-201ENST00000407695 401 ntBASIC6.25□□□□□ -1.41
MSX1P28360 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX1P28360 HSD17B7P1-201ENST00000412419 1017 ntBASIC6.25□□□□□ -1.41
MSX1P28360 AL663061.1-201ENST00000416625 580 ntBASIC6.25□□□□□ -1.41
MSX1P28360 AC008280.1-201ENST00000418851 412 ntBASIC6.25□□□□□ -1.41
MSX1P28360 RPS15AP30-201ENST00000420976 390 ntBASIC6.25□□□□□ -1.41
MSX1P28360 GAPDHP57-201ENST00000424400 585 ntBASIC6.25□□□□□ -1.41
MSX1P28360 AC096632.1-201ENST00000427395 310 ntBASIC6.25□□□□□ -1.41
MSX1P28360 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC6.25□□□□□ -1.41
MSX1P28360 IGKV1OR-3-201ENST00000446944 348 ntBASIC6.25□□□□□ -1.41
MSX1P28360 RPL23AP15-201ENST00000450202 459 ntBASIC6.25□□□□□ -1.41
MSX1P28360 AC099670.1-201ENST00000455141 783 ntBASIC6.25□□□□□ -1.41
MSX1P28360 RPL12P25-201ENST00000455592 494 ntBASIC6.25□□□□□ -1.41
MSX1P28360 RN7SL390P-201ENST00000470634 284 ntBASIC6.25□□□□□ -1.41
MSX1P28360 RN7SL382P-201ENST00000482631 282 ntBASIC6.25□□□□□ -1.41
MSX1P28360 RPL23AP72-201ENST00000492447 435 ntBASIC6.25□□□□□ -1.41
MSX1P28360 SNX18P23-201ENST00000510867 677 ntBASIC6.25□□□□□ -1.41
MSX1P28360 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC6.25□□□□□ -1.41
MSX1P28360 RN7SKP40-201ENST00000517211 242 ntBASIC6.25□□□□□ -1.41
MSX1P28360 IGLVVII-41-1-201ENST00000518405 151 ntBASIC6.25□□□□□ -1.41
MSX1P28360 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC6.25□□□□□ -1.41
MSX1P28360 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC6.25□□□□□ -1.41
MSX1P28360 OR5BK1P-201ENST00000550421 823 ntBASIC6.25□□□□□ -1.41
MSX1P28360 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX1P28360 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC6.25□□□□□ -1.41
MSX1P28360 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC6.25□□□□□ -1.41
MSX1P28360 MIR3157-201ENST00000578688 85 ntBASIC6.25□□□□□ -1.41
MSX1P28360 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX1P28360 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
MSX1P28360 AL359091.2-201ENST00000609303 556 ntBASIC6.25□□□□□ -1.41
MSX1P28360 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC6.25□□□□□ -1.41
MSX1P28360 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC6.25□□□□□ -1.41
MSX1P28360 ALG13-230ENST00000623189 458 ntTSL 3 BASIC6.25□□□□□ -1.41
MSX1P28360 UOX-205ENST00000640983 544 ntTSL 4 BASIC6.25□□□□□ -1.41
MSX1P28360 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
MSX1P28360 RAPGEF4-214ENST00000538974 3920 ntTSL 2 BASIC6.25□□□□□ -1.41
MSX1P28360 MAGEB10-202ENST00000614159 1389 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms