Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC004975.1-201ENST00000428733 208 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 RPL17P35-201ENST00000432217 549 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AL590762.3-201ENST00000436372 640 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AC103987.1-201ENST00000473394 348 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AC010285.3-201ENST00000511668 676 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 RNA5SP315-201ENST00000516340 116 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 RNA5SP312-201ENST00000517068 116 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AL355816.1-201ENST00000607951 118 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AL445493.3-201ENST00000619568 477 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AC006042.3-201ENST00000454684 1469 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AC116667.1-201ENST00000604855 2072 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 ASNSP1-201ENST00000518311 1939 ntBASIC4.21□□□□□ -1.74
LHX3Q9UBR4 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
LHX3Q9UBR4 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC083843.3-201ENST00000623679 2186 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC136624.1-201ENST00000400791 413 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AP000357.1-201ENST00000409926 1165 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 RN7SKP247-201ENST00000411094 308 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 TCEA1P4-201ENST00000415066 844 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 RPL23AP89-201ENST00000439324 255 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC006011.1-201ENST00000442758 349 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC239809.1-201ENST00000450470 217 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 MTND2P8-201ENST00000450555 1025 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 MTND6P6-201ENST00000478031 263 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 RN7SL604P-201ENST00000492589 296 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 IGBP1P5-201ENST00000507524 1000 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 RNU6-1102P-201ENST00000516149 96 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC025260.1-201ENST00000548858 430 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC020910.2-201ENST00000603635 610 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC079880.2-201ENST00000603790 1213 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 MIR6867-201ENST00000610636 67 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC010608.2-201ENST00000624830 470 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC114546.3-201ENST00000623582 1734 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
LHX3Q9UBR4 AC092162.3-201ENST00000624511 1624 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 MTND4P31-201ENST00000425607 1343 ntBASIC4.2□□□□□ -1.74
LHX3Q9UBR4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.19□□□□□ -1.74
LHX3Q9UBR4 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.19□□□□□ -1.74
LHX3Q9UBR4 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
LHX3Q9UBR4 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
LHX3Q9UBR4 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
LHX3Q9UBR4 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
LHX3Q9UBR4 AL118496.1-201ENST00000440201 1812 ntBASIC4.19□□□□□ -1.74
LHX3Q9UBR4 MTND5P11-201ENST00000511037 1812 ntBASIC4.19□□□□□ -1.74
LHX3Q9UBR4 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
LHX3Q9UBR4 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
LHX3Q9UBR4 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
LHX3Q9UBR4 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
LHX3Q9UBR4 RNA5SP130-201ENST00000364431 114 ntBASIC4.19□□□□□ -1.74
LHX3Q9UBR4 RNU1-13P-201ENST00000384499 162 ntBASIC4.19□□□□□ -1.74
LHX3Q9UBR4 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
LHX3Q9UBR4 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.19□□□□□ -1.74
LHX3Q9UBR4 EIF4A1P3-201ENST00000411521 244 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms