Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC092709.1-201ENST00000521355 1045 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 MTCO1P49-201ENST00000523429 802 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC083923.1-201ENST00000523708 376 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 MTCYBP20-201ENST00000524239 1129 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC124293.1-201ENST00000530034 493 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 ELOCP32-201ENST00000548625 324 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC007599.1-201ENST00000568688 1174 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 MIR5708-201ENST00000579723 85 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AP001542.2-201ENST00000593141 364 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC068790.7-201ENST00000602347 528 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AP005432.2-201ENST00000608162 586 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC099676.1-201ENST00000608886 657 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC122133.1-201ENST00000613964 233 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC024595.1-201ENST00000623088 387 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC007342.8-201ENST00000623278 678 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC138393.1-206ENST00000540997 1886 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC5.17□□□□□ -1.58
DKK3Q9UBP4 AC000374.1-201ENST00000434698 1745 ntBASIC5.17□□□□□ -1.58
DKK3Q9UBP4 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 RN7SKP113-201ENST00000363891 295 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 RNU6-560P-201ENST00000364007 108 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 MIR141-201ENST00000384975 95 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 RNU6-244P-201ENST00000391028 104 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 RPS24P12-201ENST00000402084 394 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 RNU6-648P-201ENST00000410190 107 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC004074.1-201ENST00000421810 1063 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AL589823.1-201ENST00000429577 183 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 ELOCP30-201ENST00000447108 299 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC009220.1-201ENST00000451614 275 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 HMGN2P25-201ENST00000486956 268 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC084024.2-201ENST00000503480 791 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 MTND4P2-201ENST00000507767 1203 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 RN7SKP147-201ENST00000517154 244 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC023161.2-201ENST00000551218 780 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 MIR3912-201ENST00000577566 105 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC123786.2-201ENST00000603459 275 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC064872.1-201ENST00000604823 1072 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC090948.2-201ENST00000607363 564 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC093799.2-201ENST00000610062 578 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AL133243.1-201ENST00000614487 366 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC091965.5-201ENST00000624785 342 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 AC119674.1-212ENST00000641155 993 ntBASIC5.16□□□□□ -1.58
DKK3Q9UBP4 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
DKK3Q9UBP4 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
DKK3Q9UBP4 AC093535.2-201ENST00000624769 2326 ntBASIC5.15□□□□□ -1.58
DKK3Q9UBP4 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.15□□□□□ -1.58
DKK3Q9UBP4 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.15□□□□□ -1.58
DKK3Q9UBP4 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC5.15□□□□□ -1.58
DKK3Q9UBP4 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
DKK3Q9UBP4 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
DKK3Q9UBP4 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
DKK3Q9UBP4 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.15□□□□□ -1.58
DKK3Q9UBP4 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC5.15□□□□□ -1.58
DKK3Q9UBP4 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms