Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AP000553.6-201ENST00000641242 118 ntBASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 AP002512.4-202ENST00000641599 4530 ntBASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SHANK3Q9BYB0 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 IL6STP1-201ENST00000346911 1020 ntBASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 HSPE1P16-201ENST00000426640 348 ntBASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 NPM1P25-201ENST00000429734 854 ntBASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 RNU4-35P-201ENST00000362588 141 ntBASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 AC093719.1-202ENST00000392735 373 ntBASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 RNA5SP80-201ENST00000410475 111 ntBASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 AJ239321.1-201ENST00000424255 564 ntBASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 PTP4A1P3-201ENST00000433661 420 ntBASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 AC092641.1-201ENST00000440229 772 ntBASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 OR52Y1P-201ENST00000452418 828 ntBASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 TCP1P3-201ENST00000414406 1498 ntBASIC4.86□□□□□ -1.63
SHANK3Q9BYB0 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 AC097504.1-201ENST00000515103 2415 ntBASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 HSFY4P-201ENST00000415994 1181 ntBASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 AL645931.1-201ENST00000439737 410 ntBASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 RPL32P34-201ENST00000486380 400 ntBASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 AP000255.1-201ENST00000610276 676 ntBASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
SHANK3Q9BYB0 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 AC008065.1-201ENST00000428525 348 ntBASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 Z75741.1-201ENST00000446793 314 ntBASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 AC004924.1-201ENST00000480160 781 ntBASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 AC026784.1-201ENST00000507986 352 ntBASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 AC010342.1-201ENST00000514047 877 ntBASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 AC006504.3-201ENST00000586818 523 ntBASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 AC006363.1-201ENST00000603806 463 ntBASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 ATE1-AS1-202ENST00000636460 506 ntBASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
SHANK3Q9BYB0 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SHANK3Q9BYB0 ZNF826P-207ENST00000622273 1910 ntBASIC4.84□□□□□ -1.64
SHANK3Q9BYB0 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
SHANK3Q9BYB0 RN7SKP97-201ENST00000410966 333 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 AC087650.1-201ENST00000431445 468 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 SNORA71B-202ENST00000439232 272 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 KC877373.1-201ENST00000479066 408 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 AC027309.2-201ENST00000520566 192 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 OR4A12P-201ENST00000530847 918 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 AC006960.3-201ENST00000561845 705 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 AC034105.3-201ENST00000565294 442 ntBASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.83□□□□□ -1.64
SHANK3Q9BYB0 YPEL5P2-201ENST00000605553 359 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms