Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC5.58□□□□□ -1.52
PTCHD1Q96NR3 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 RPS4XP5-202ENST00000449995 1334 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 RNY4P34-201ENST00000364779 95 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 RNU1-149P-201ENST00000390870 161 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 SNRPEP2-201ENST00000397592 279 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 PEX12P1-201ENST00000400284 1048 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AL121972.1-201ENST00000402023 252 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC016739.1-201ENST00000405359 345 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 MIR320C1-201ENST00000408566 88 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 USP9YP27-201ENST00000418455 438 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC127526.2-201ENST00000426436 775 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC009961.2-201ENST00000435771 251 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 SNRPEP7-201ENST00000438350 220 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 Z82190.1-201ENST00000454534 490 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC092757.1-201ENST00000467293 467 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 SNRPCP3-201ENST00000474888 476 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 UBA52P3-201ENST00000491303 382 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 RN7SL57P-201ENST00000493687 290 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC025465.4-201ENST00000513422 638 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 RN7SKP288-201ENST00000516227 268 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 ANP32BP3-201ENST00000559213 706 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC092121.1-201ENST00000569452 202 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AP005119.2-201ENST00000579735 1105 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 MIR3682-201ENST00000581338 84 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AP001180.3-201ENST00000582221 145 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 FAM27E4-201ENST00000605259 342 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC015982.1-201ENST00000608113 465 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 VPS35P1-201ENST00000563400 1518 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AP005432.1-201ENST00000580891 3485 ntBASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.57□□□□□ -1.52
PTCHD1Q96NR3 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 MRE11P1-201ENST00000464884 2127 ntBASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 RNU6-777P-201ENST00000364265 104 ntBASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 RNA5SP211-201ENST00000365516 117 ntBASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 XGY1-201ENST00000381172 446 ntBASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 HMGB3P7-201ENST00000400214 611 ntBASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 RPL23AP17-201ENST00000401064 499 ntBASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 MIR1203-201ENST00000408812 85 ntBASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 RPL21P111-201ENST00000418453 477 ntBASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 RPS4XP5-201ENST00000419038 768 ntBASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 AL035660.1-201ENST00000422041 222 ntBASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 USP9YP36-201ENST00000424581 829 ntBASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 FTLP19-201ENST00000433300 394 ntBASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.56□□□□□ -1.52
PTCHD1Q96NR3 OR6K1P-201ENST00000456766 971 ntBASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms