Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC112Q8NEF3 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 SNORA57.1-201ENST00000391227 145 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 HMGB3P19-201ENST00000403971 560 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AMZ2P2-201ENST00000406819 1057 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AL035696.2-201ENST00000407941 709 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 RN7SKP182-201ENST00000410772 298 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 RPL7AP73-201ENST00000413490 353 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 OR5AW1P-201ENST00000426334 1006 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AC083863.1-201ENST00000438811 231 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 MTCYBP21-201ENST00000443300 1113 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 NUTF2P7-201ENST00000453086 375 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AC098824.1-201ENST00000453565 980 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AC092691.2-201ENST00000461787 803 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 PPIAP15-201ENST00000479662 484 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 TRBV8-1-201ENST00000481590 279 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 RPS27AP16-201ENST00000492222 470 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AC025674.1-201ENST00000507074 324 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 SNORA31.9-201ENST00000516429 84 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 RN7SKP21-201ENST00000516503 220 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 RN7SKP83-201ENST00000516512 178 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 TRAV8-5-201ENST00000537369 341 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 PSMB7P1-201ENST00000556349 514 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AC007224.1-201ENST00000564410 144 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 MIR3160-1-201ENST00000577972 85 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 AC091905.1-201ENST00000624400 311 ntBASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC112Q8NEF3 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 CEP170P1-201ENST00000502249 4587 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AC010740.1-201ENST00000417035 684 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AC002075.2-201ENST00000425207 252 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AL606490.8-201ENST00000441624 319 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AC114755.5-201ENST00000447760 831 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 NUTF2P3-201ENST00000448540 384 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 RPS17P13-201ENST00000448974 407 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AC004801.2-202ENST00000463559 283 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 UQCRHP4-201ENST00000471686 272 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AC037198.2-201ENST00000478845 733 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AC008958.1-201ENST00000511047 682 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 MRPL49P2-201ENST00000521066 465 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 OR8G5-201ENST00000524943 1041 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AC068831.4-201ENST00000556118 109 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AGGF1P8-201ENST00000562979 1000 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 RNVU1-4-201ENST00000612985 164 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AC114781.5-201ENST00000615297 108 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AL391261.4-201ENST00000616012 481 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 MIR7151-201ENST00000617477 60 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 ATE1-AS1-202ENST00000636460 506 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 AC007390.2-201ENST00000606229 3803 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 CCT8P1-201ENST00000413611 1657 ntBASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
CCDC112Q8NEF3 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 AL021368.2-201ENST00000606125 5352 ntBASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 SNORA11-201ENST00000408789 128 ntBASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 MTND4LP21-201ENST00000415303 295 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 138.8 ms