Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
RAE1P78406 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
RAE1P78406 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.72□□□□□ -1.65
RAE1P78406 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
RAE1P78406 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.71□□□□□ -1.65
RAE1P78406 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.71□□□□□ -1.65
RAE1P78406 THAP12P4-201ENST00000528321 2266 ntBASIC4.71□□□□□ -1.65
RAE1P78406 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.65
RAE1P78406 AC027228.2-201ENST00000567141 2154 ntBASIC4.71□□□□□ -1.65
RAE1P78406 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
RAE1P78406 TCP11X1-202ENST00000622971 1372 ntBASIC4.71□□□□□ -1.66
RAE1P78406 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
RAE1P78406 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 RNU6-1066P-201ENST00000363573 105 ntBASIC4.71□□□□□ -1.66
RAE1P78406 RNA5SP455-201ENST00000365190 119 ntBASIC4.71□□□□□ -1.66
RAE1P78406 SUGT1P1-201ENST00000379514 476 ntBASIC4.71□□□□□ -1.66
RAE1P78406 SNORD116-23-201ENST00000384645 92 ntBASIC4.71□□□□□ -1.66
RAE1P78406 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
RAE1P78406 RPL23AP47-201ENST00000408017 460 ntBASIC4.71□□□□□ -1.66
RAE1P78406 TPT1P2-201ENST00000413105 503 ntBASIC4.71□□□□□ -1.66
RAE1P78406 BTF3L4P1-201ENST00000413813 468 ntBASIC4.71□□□□□ -1.66
RAE1P78406 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC4.71□□□□□ -1.66
RAE1P78406 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC4.71□□□□□ -1.66
RAE1P78406 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC4.71□□□□□ -1.66
RAE1P78406 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
RAE1P78406 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.71□□□□□ -1.66
RAE1P78406 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 AL163193.1-201ENST00000444895 788 ntBASIC4.71□□□□□ -1.66
RAE1P78406 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC4.71□□□□□ -1.66
RAE1P78406 AC009961.3-201ENST00000449832 765 ntBASIC4.71□□□□□ -1.66
RAE1P78406 RPL12P26-201ENST00000452430 487 ntBASIC4.71□□□□□ -1.66
RAE1P78406 ANK3-207ENST00000460468 677 ntTSL 3 BASIC4.71□□□□□ -1.66
RAE1P78406 RN7SL517P-201ENST00000462240 305 ntBASIC4.71□□□□□ -1.66
RAE1P78406 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC4.71□□□□□ -1.66
RAE1P78406 AC090686.1-201ENST00000481577 749 ntBASIC4.71□□□□□ -1.66
RAE1P78406 AC008953.1-201ENST00000497334 318 ntBASIC4.71□□□□□ -1.66
RAE1P78406 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC4.71□□□□□ -1.66
RAE1P78406 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.71□□□□□ -1.66
RAE1P78406 HMGB3P16-201ENST00000508037 287 ntBASIC4.71□□□□□ -1.66
RAE1P78406 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
RAE1P78406 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC4.71□□□□□ -1.66
RAE1P78406 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 RNA5SP392-201ENST00000516905 112 ntBASIC4.71□□□□□ -1.66
RAE1P78406 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.71□□□□□ -1.66
RAE1P78406 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.71□□□□□ -1.66
RAE1P78406 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 AP001189.2-201ENST00000527320 189 ntBASIC4.71□□□□□ -1.66
RAE1P78406 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.71□□□□□ -1.66
RAE1P78406 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.71□□□□□ -1.66
RAE1P78406 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC4.71□□□□□ -1.66
RAE1P78406 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC4.71□□□□□ -1.66
RAE1P78406 AC009852.2-201ENST00000567898 485 ntBASIC4.71□□□□□ -1.66
RAE1P78406 CYCSP40-201ENST00000575927 294 ntBASIC4.71□□□□□ -1.66
RAE1P78406 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 MIR4691-201ENST00000583764 85 ntBASIC4.71□□□□□ -1.66
RAE1P78406 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 AC010487.1-201ENST00000594408 1172 ntBASIC4.71□□□□□ -1.66
RAE1P78406 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 AC234782.5-201ENST00000617723 324 ntBASIC4.71□□□□□ -1.66
RAE1P78406 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
RAE1P78406 AL607023.1-201ENST00000620045 248 ntBASIC4.71□□□□□ -1.66
RAE1P78406 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC4.71□□□□□ -1.66
RAE1P78406 AC116563.2-201ENST00000624751 535 ntBASIC4.71□□□□□ -1.66
RAE1P78406 CASC19-222ENST00000641321 1173 ntBASIC4.71□□□□□ -1.66
RAE1P78406 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
RAE1P78406 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
RAE1P78406 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
RAE1P78406 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 AC092162.3-201ENST00000624511 1624 ntBASIC4.71□□□□□ -1.66
RAE1P78406 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
RAE1P78406 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
RAE1P78406 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
RAE1P78406 ANKRD20A17P-201ENST00000511745 1330 ntBASIC4.71□□□□□ -1.66
RAE1P78406 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.71□□□□□ -1.66
RAE1P78406 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.71□□□□□ -1.66
RAE1P78406 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
RAE1P78406 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.7□□□□□ -1.66
RAE1P78406 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.7□□□□□ -1.66
RAE1P78406 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
RAE1P78406 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
RAE1P78406 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
RAE1P78406 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.7□□□□□ -1.66
RAE1P78406 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.7□□□□□ -1.66
RAE1P78406 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.7□□□□□ -1.66
RAE1P78406 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
RAE1P78406 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
RAE1P78406 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
RAE1P78406 RNA5SP428-201ENST00000365129 132 ntBASIC4.7□□□□□ -1.66
RAE1P78406 Y_RNA.436-201ENST00000384097 102 ntBASIC4.7□□□□□ -1.66
RAE1P78406 RNU1-106P-201ENST00000384382 164 ntBASIC4.7□□□□□ -1.66
RAE1P78406 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.7□□□□□ -1.66
RAE1P78406 AC005522.1-201ENST00000395416 346 ntBASIC4.7□□□□□ -1.66
RAE1P78406 RPS3AP26-201ENST00000398259 784 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms