Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
LIG3P49916 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
LIG3P49916 RNA5SP434-201ENST00000516647 121 ntBASIC6.17□□□□□ -1.42
LIG3P49916 OR4A12P-201ENST00000530847 918 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AP004609.2-201ENST00000532177 190 ntBASIC6.17□□□□□ -1.42
LIG3P49916 RPA2P3-201ENST00000533268 770 ntBASIC6.17□□□□□ -1.42
LIG3P49916 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.17□□□□□ -1.42
LIG3P49916 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC6.17□□□□□ -1.42
LIG3P49916 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIG3P49916 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC6.17□□□□□ -1.42
LIG3P49916 SULT1C2P1-202ENST00000562418 459 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC6.17□□□□□ -1.42
LIG3P49916 AP001180.3-201ENST00000582221 145 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AC008507.3-201ENST00000585753 472 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AC060780.2-201ENST00000589047 198 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC6.17□□□□□ -1.42
LIG3P49916 AC063977.5-201ENST00000601044 974 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC6.17□□□□□ -1.42
LIG3P49916 AC009027.1-201ENST00000604510 479 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AC008945.2-201ENST00000606056 604 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AL022394.1-201ENST00000606979 292 ntBASIC6.17□□□□□ -1.42
LIG3P49916 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC6.17□□□□□ -1.42
LIG3P49916 Y_RNA.804-201ENST00000615262 101 ntBASIC6.17□□□□□ -1.42
LIG3P49916 MIR6778-201ENST00000617912 73 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.17□□□□□ -1.42
LIG3P49916 AC138965.3-201ENST00000623875 498 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AC068880.5-201ENST00000624331 290 ntBASIC6.17□□□□□ -1.42
LIG3P49916 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
LIG3P49916 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
LIG3P49916 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
LIG3P49916 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
LIG3P49916 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIG3P49916 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC6.17□□□□□ -1.42
LIG3P49916 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
LIG3P49916 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIG3P49916 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
LIG3P49916 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 RARSP1-201ENST00000542842 1418 ntBASIC6.16□□□□□ -1.42
LIG3P49916 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.42
LIG3P49916 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC6.16□□□□□ -1.42
LIG3P49916 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
LIG3P49916 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC6.16□□□□□ -1.42
LIG3P49916 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC6.16□□□□□ -1.42
LIG3P49916 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC6.16□□□□□ -1.42
LIG3P49916 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 OR4K15-201ENST00000305051 1216 ntBASIC6.16□□□□□ -1.42
LIG3P49916 OR11H4-201ENST00000315409 1082 ntBASIC6.16□□□□□ -1.42
LIG3P49916 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
LIG3P49916 PKIB-203ENST00000368446 556 ntTSL 2 BASIC6.16□□□□□ -1.42
LIG3P49916 AC004386.1-201ENST00000393214 761 ntBASIC6.16□□□□□ -1.42
LIG3P49916 GAPDHP42-201ENST00000406848 981 ntBASIC6.16□□□□□ -1.42
LIG3P49916 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
LIG3P49916 RN7SKP266-201ENST00000410232 287 ntBASIC6.16□□□□□ -1.42
LIG3P49916 Y_RNA.608-201ENST00000410647 95 ntBASIC6.16□□□□□ -1.42
LIG3P49916 RNU2-41P-201ENST00000410991 178 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC6.16□□□□□ -1.42
LIG3P49916 AC069157.1-201ENST00000421749 137 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC6.16□□□□□ -1.42
LIG3P49916 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC6.16□□□□□ -1.42
LIG3P49916 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC6.16□□□□□ -1.42
LIG3P49916 AP000936.3-201ENST00000438127 255 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AL161722.1-201ENST00000446972 1032 ntBASIC6.16□□□□□ -1.42
LIG3P49916 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC6.16□□□□□ -1.42
LIG3P49916 GAPDHP17-201ENST00000449858 1001 ntBASIC6.16□□□□□ -1.42
LIG3P49916 Z82190.1-201ENST00000454534 490 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AC023194.2-201ENST00000465398 406 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AC098847.1-201ENST00000473094 348 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AC019235.1-201ENST00000503847 207 ntBASIC6.16□□□□□ -1.42
LIG3P49916 HMGB1P29-201ENST00000505659 499 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AC022447.3-201ENST00000506865 495 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AC009646.1-201ENST00000510455 318 ntBASIC6.16□□□□□ -1.42
LIG3P49916 TOMM22P4-201ENST00000511318 336 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC6.16□□□□□ -1.42
LIG3P49916 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC6.16□□□□□ -1.42
LIG3P49916 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC6.16□□□□□ -1.42
LIG3P49916 NELL2-211ENST00000548826 559 ntTSL 2 BASIC6.16□□□□□ -1.42
LIG3P49916 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.16□□□□□ -1.42
LIG3P49916 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC6.16□□□□□ -1.42
LIG3P49916 RPL21P5-201ENST00000554662 472 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC6.16□□□□□ -1.42
LIG3P49916 CYCSP38-201ENST00000559840 322 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC6.16□□□□□ -1.42
LIG3P49916 NPIPB1P-202ENST00000588786 828 ntBASIC6.16□□□□□ -1.42
LIG3P49916 MEMO1P5-201ENST00000604810 406 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AC008555.7-201ENST00000605008 583 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AC016727.1-205ENST00000605437 569 ntBASIC6.16□□□□□ -1.42
LIG3P49916 UBE2Q2P2-203ENST00000613592 761 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AP003400.3-201ENST00000624904 346 ntBASIC6.16□□□□□ -1.42
LIG3P49916 AC110994.2-201ENST00000635481 492 ntBASIC6.16□□□□□ -1.42
LIG3P49916 MIR1910-201ENST00000636955 80 ntBASIC6.16□□□□□ -1.42
LIG3P49916 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
LIG3P49916 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms