Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
HOXA1P49639 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 SNORD116-8-201ENST00000384365 95 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 RNU6-225P-201ENST00000384613 103 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HOXA1P49639 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HOXA1P49639 RNU1-77P-201ENST00000390868 162 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
HOXA1P49639 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
HOXA1P49639 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA1P49639 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXA1P49639 RAP1BP1-201ENST00000412709 553 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 GSTM3P2-201ENST00000412746 530 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA1P49639 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA1P49639 AL133325.1-201ENST00000421090 382 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 IPPKP1-201ENST00000422501 768 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 AL009174.1-201ENST00000426577 416 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 AP001324.1-201ENST00000428553 399 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA1P49639 CYCSP6-201ENST00000434498 302 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXA1P49639 HSD52-202ENST00000436225 772 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA1P49639 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA1P49639 AL138899.2-201ENST00000439139 499 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 AC064862.4-201ENST00000442180 334 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA1P49639 AP000281.1-201ENST00000444036 316 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 HMGB1P16-201ENST00000447155 540 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 AC007327.1-201ENST00000447461 264 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HOXA1P49639 RHEBP2-201ENST00000450289 600 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA1P49639 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA1P49639 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXA1P49639 AL356981.1-201ENST00000454879 684 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HOXA1P49639 MTND2P14-201ENST00000482139 351 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA1P49639 GTF2F2P1-201ENST00000511083 675 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 AC010486.3-201ENST00000511602 785 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 SNORD46.2-201ENST00000516021 102 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXA1P49639 RPL23AP53-201ENST00000521854 457 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA1P49639 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.1□□□□□ -1.75
HOXA1P49639 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA1P49639 AP000926.4-201ENST00000527351 454 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 PDCL2P2-201ENST00000533651 189 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXA1P49639 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA1P49639 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXA1P49639 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA1P49639 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXA1P49639 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXA1P49639 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXA1P49639 AGGF1P6-201ENST00000569213 976 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA1P49639 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXA1P49639 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXA1P49639 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA1P49639 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA1P49639 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA1P49639 FO393422.1-201ENST00000603908 708 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 AC023813.4-201ENST00000607580 580 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
HOXA1P49639 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 AC092608.3-201ENST00000625017 386 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 TATDN1-221ENST00000630259 915 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA1P49639 MIR1322-201ENST00000638013 71 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.1□□□□□ -1.75
HOXA1P49639 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.1□□□□□ -1.75
HOXA1P49639 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
HOXA1P49639 Z73965.1-201ENST00000623412 2297 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 ECM1P2-201ENST00000503354 1577 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
HOXA1P49639 ALB-209ENST00000503124 1741 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXA1P49639 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA1P49639 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXA1P49639 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA1P49639 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA1P49639 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
HOXA1P49639 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA1P49639 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA1P49639 SNORD74.4-201ENST00000364129 80 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 SNORA2.3-201ENST00000383920 135 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 Y_RNA.408-201ENST00000383987 102 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 Y_RNA.465-201ENST00000384293 102 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 NCSTNP1-201ENST00000406229 144 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXA1P49639 AL450992.3-201ENST00000413192 568 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXA1P49639 USP9YP26-201ENST00000421008 661 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms