Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU1-63P-201ENST00000383902 164 ntBASIC4.44□□□□□ -1.7
MSH3P20585 RNU6-225P-201ENST00000384613 103 ntBASIC4.44□□□□□ -1.7
MSH3P20585 MIR142-201ENST00000384835 87 ntBASIC4.44□□□□□ -1.7
MSH3P20585 MIR129-1-201ENST00000384972 72 ntBASIC4.44□□□□□ -1.7
MSH3P20585 UBTFL3-201ENST00000418934 1024 ntBASIC4.44□□□□□ -1.7
MSH3P20585 AC062016.2-201ENST00000420950 676 ntBASIC4.44□□□□□ -1.7
MSH3P20585 RPEP3-201ENST00000425462 676 ntBASIC4.44□□□□□ -1.7
MSH3P20585 CNOT7P1-201ENST00000429006 852 ntBASIC4.44□□□□□ -1.7
MSH3P20585 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
MSH3P20585 AC097499.1-201ENST00000444277 208 ntBASIC4.44□□□□□ -1.7
MSH3P20585 NDUFAF4P2-201ENST00000445374 520 ntBASIC4.44□□□□□ -1.7
MSH3P20585 RPL34P26-201ENST00000445636 354 ntBASIC4.44□□□□□ -1.7
MSH3P20585 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.44□□□□□ -1.7
MSH3P20585 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.44□□□□□ -1.7
MSH3P20585 VN1R32P-201ENST00000452234 905 ntBASIC4.44□□□□□ -1.7
MSH3P20585 snoU13.1-201ENST00000459157 104 ntBASIC4.44□□□□□ -1.7
MSH3P20585 RPS27AP17-201ENST00000463344 455 ntBASIC4.44□□□□□ -1.7
MSH3P20585 RPL21P126-201ENST00000470049 478 ntBASIC4.44□□□□□ -1.7
MSH3P20585 UBTFL6-201ENST00000477929 1024 ntBASIC4.44□□□□□ -1.7
MSH3P20585 RPS3AP6-201ENST00000484430 795 ntBASIC4.44□□□□□ -1.7
MSH3P20585 RPS27AP16-201ENST00000492222 470 ntBASIC4.44□□□□□ -1.7
MSH3P20585 AC026414.1-201ENST00000504046 698 ntBASIC4.44□□□□□ -1.7
MSH3P20585 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.44□□□□□ -1.7
MSH3P20585 AC108471.1-201ENST00000513977 287 ntBASIC4.44□□□□□ -1.7
MSH3P20585 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC4.44□□□□□ -1.7
MSH3P20585 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.44□□□□□ -1.7
MSH3P20585 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
MSH3P20585 AP000827.1-201ENST00000527814 258 ntBASIC4.44□□□□□ -1.7
MSH3P20585 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
MSH3P20585 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.44□□□□□ -1.7
MSH3P20585 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.44□□□□□ -1.7
MSH3P20585 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
MSH3P20585 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.44□□□□□ -1.7
MSH3P20585 AGGF1P5-201ENST00000567900 919 ntBASIC4.44□□□□□ -1.7
MSH3P20585 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.44□□□□□ -1.7
MSH3P20585 AC020634.1-201ENST00000608701 549 ntBASIC4.44□□□□□ -1.7
MSH3P20585 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
MSH3P20585 AC015908.5-201ENST00000623289 343 ntBASIC4.44□□□□□ -1.7
MSH3P20585 AL109659.3-201ENST00000624985 950 ntBASIC4.44□□□□□ -1.7
MSH3P20585 OR2L1P-202ENST00000641567 1023 ntBASIC4.44□□□□□ -1.7
MSH3P20585 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.44□□□□□ -1.7
MSH3P20585 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
MSH3P20585 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
MSH3P20585 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.44□□□□□ -1.7
MSH3P20585 ZNF849P-201ENST00000594711 1566 ntBASIC4.44□□□□□ -1.7
MSH3P20585 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
MSH3P20585 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSH3P20585 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSH3P20585 ZNF29P-201ENST00000225587 168 ntBASIC4.43□□□□□ -1.7
MSH3P20585 OR10J6P-201ENST00000289731 930 ntBASIC4.43□□□□□ -1.7
MSH3P20585 RNU5B-1-201ENST00000363286 116 ntBASIC4.43□□□□□ -1.7
MSH3P20585 RNA5SP22-201ENST00000365393 109 ntBASIC4.43□□□□□ -1.7
MSH3P20585 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSH3P20585 EIF4A1P3-201ENST00000411521 244 ntBASIC4.43□□□□□ -1.7
MSH3P20585 HMGB3P31-201ENST00000413333 595 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH3P20585 DPY19L1P2-201ENST00000426647 915 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AC093422.3-201ENST00000428506 305 ntBASIC4.43□□□□□ -1.7
MSH3P20585 HMGB3P5-201ENST00000428894 612 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH3P20585 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC4.43□□□□□ -1.7
MSH3P20585 RPL12P28-201ENST00000430852 489 ntBASIC4.43□□□□□ -1.7
MSH3P20585 MTATP6P17-201ENST00000431030 672 ntBASIC4.43□□□□□ -1.7
MSH3P20585 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.43□□□□□ -1.7
MSH3P20585 MTCO1P52-201ENST00000433928 531 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
MSH3P20585 MTCO1P53-201ENST00000441633 699 ntBASIC4.43□□□□□ -1.7
MSH3P20585 FHP1-201ENST00000442741 703 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH3P20585 AL031313.1-201ENST00000448435 256 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.43□□□□□ -1.7
MSH3P20585 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
MSH3P20585 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH3P20585 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.43□□□□□ -1.7
MSH3P20585 RPL5P30-201ENST00000465511 891 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH3P20585 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.43□□□□□ -1.7
MSH3P20585 AC015795.1-201ENST00000513669 327 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH3P20585 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.43□□□□□ -1.7
MSH3P20585 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH3P20585 AC026407.1-201ENST00000518369 204 ntBASIC4.43□□□□□ -1.7
MSH3P20585 OR8G5-201ENST00000524943 1041 ntBASIC4.43□□□□□ -1.7
MSH3P20585 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.43□□□□□ -1.7
MSH3P20585 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH3P20585 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.43□□□□□ -1.7
MSH3P20585 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC4.43□□□□□ -1.7
MSH3P20585 MIR4789-201ENST00000577469 82 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.43□□□□□ -1.7
MSH3P20585 AL160237.3-201ENST00000604114 1013 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AL445435.1-201ENST00000604232 665 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AL353726.1-201ENST00000614041 1000 ntBASIC4.43□□□□□ -1.7
MSH3P20585 SNX18P1Y-201ENST00000616231 511 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AC009237.17-201ENST00000618111 748 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AL023881.1-201ENST00000621088 301 ntBASIC4.43□□□□□ -1.7
MSH3P20585 BMS1P21-201ENST00000634565 365 ntBASIC4.43□□□□□ -1.7
MSH3P20585 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.43□□□□□ -1.7
MSH3P20585 MTCO1P18-201ENST00000455518 1419 ntBASIC4.43□□□□□ -1.7
MSH3P20585 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.43□□□□□ -1.7
MSH3P20585 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms