Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RPS12P5-201ENST00000423449 371 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 AL590623.1-201ENST00000427864 105 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.51□□□□□ -1.69
CLDN3O15551 AC006011.1-201ENST00000442758 349 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.51□□□□□ -1.69
CLDN3O15551 HMGB1P5-202ENST00000451497 985 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 RAD23BP3-201ENST00000454157 1152 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 RPL36AP13-201ENST00000457490 317 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 RPL38P1-201ENST00000460914 211 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 RPL7P1-201ENST00000468161 747 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 RPL7P9-201ENST00000468715 747 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.51□□□□□ -1.69
CLDN3O15551 AC011037.1-201ENST00000483964 558 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.51□□□□□ -1.69
CLDN3O15551 MIR2116-201ENST00000517221 80 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC4.51□□□□□ -1.69
CLDN3O15551 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.51□□□□□ -1.69
CLDN3O15551 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.51□□□□□ -1.69
CLDN3O15551 AC069240.1-201ENST00000548774 375 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 AC084757.1-201ENST00000559987 490 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.51□□□□□ -1.69
CLDN3O15551 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.51□□□□□ -1.69
CLDN3O15551 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 CFTRP2-201ENST00000634304 199 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
CLDN3O15551 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.51□□□□□ -1.69
CLDN3O15551 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
CLDN3O15551 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
CLDN3O15551 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CLDN3O15551 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.51□□□□□ -1.69
CLDN3O15551 AC016588.2-201ENST00000632484 3021 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 AC011266.1-201ENST00000624119 3569 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
CLDN3O15551 ERCC6-202ENST00000374127 1782 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
CLDN3O15551 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.5□□□□□ -1.69
CLDN3O15551 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CLDN3O15551 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CLDN3O15551 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.5□□□□□ -1.69
CLDN3O15551 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
CLDN3O15551 RNA5SP130-201ENST00000364431 114 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 RNU6-317P-201ENST00000384031 107 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 MIR708-201ENST00000390708 88 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 AL356095.1-201ENST00000417217 199 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC4.5□□□□□ -1.69
CLDN3O15551 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.5□□□□□ -1.69
CLDN3O15551 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.5□□□□□ -1.69
CLDN3O15551 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.5□□□□□ -1.69
CLDN3O15551 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.5□□□□□ -1.69
CLDN3O15551 RPL34P26-201ENST00000445636 354 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 MTND3P4-201ENST00000453537 303 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.5□□□□□ -1.69
CLDN3O15551 RNA5SP154-201ENST00000516193 111 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.5□□□□□ -1.69
CLDN3O15551 AC090819.1-201ENST00000523800 1111 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.5□□□□□ -1.69
CLDN3O15551 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.5□□□□□ -1.69
CLDN3O15551 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.5□□□□□ -1.69
CLDN3O15551 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
CLDN3O15551 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.5□□□□□ -1.69
CLDN3O15551 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.5□□□□□ -1.69
CLDN3O15551 MIR432-201ENST00000606207 94 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 RNU4-89P-201ENST00000607443 133 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 AL096803.3-201ENST00000609032 532 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 MIR6867-201ENST00000610636 67 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 AC064801.1-201ENST00000612025 407 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
CLDN3O15551 MIR7151-201ENST00000617477 60 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 ZYXP1-201ENST00000617638 118 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 AP005264.7-201ENST00000625003 745 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CLDN3O15551 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
CLDN3O15551 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
CLDN3O15551 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
CLDN3O15551 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CLDN3O15551 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
CLDN3O15551 AL049555.1-201ENST00000562834 1933 ntBASIC4.5□□□□□ -1.69
CLDN3O15551 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
CLDN3O15551 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
CLDN3O15551 Z73965.1-201ENST00000623412 2297 ntBASIC4.49□□□□□ -1.69
CLDN3O15551 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.49□□□□□ -1.69
CLDN3O15551 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CLDN3O15551 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
CLDN3O15551 RNA5SP513-201ENST00000364648 118 ntBASIC4.49□□□□□ -1.69
CLDN3O15551 RNU4-31P-201ENST00000384211 141 ntBASIC4.49□□□□□ -1.69
CLDN3O15551 RNU1-13P-201ENST00000384499 162 ntBASIC4.49□□□□□ -1.69
CLDN3O15551 Z86062.1-201ENST00000406773 777 ntBASIC4.49□□□□□ -1.69
CLDN3O15551 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.49□□□□□ -1.69
CLDN3O15551 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.49□□□□□ -1.69
CLDN3O15551 OR4C10P-201ENST00000434991 931 ntBASIC4.49□□□□□ -1.69
CLDN3O15551 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC4.49□□□□□ -1.69
CLDN3O15551 AC010683.1-201ENST00000473673 378 ntBASIC4.49□□□□□ -1.69
CLDN3O15551 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.49□□□□□ -1.69
CLDN3O15551 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.49□□□□□ -1.69
CLDN3O15551 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.49□□□□□ -1.69
CLDN3O15551 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.49□□□□□ -1.69
CLDN3O15551 NOP56P3-201ENST00000549457 385 ntBASIC4.49□□□□□ -1.69
CLDN3O15551 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.49□□□□□ -1.69
CLDN3O15551 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms