Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AC092490.3-201ENST00000545370 572 ntBASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AC006349.1-201ENST00000555526 235 ntBASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AL590229.1-201ENST00000603497 542 ntBASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AC006363.1-201ENST00000603806 463 ntBASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AC010738.1-201ENST00000604970 987 ntBASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AC133644.2-201ENST00000608142 540 ntBASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AP005432.2-201ENST00000608162 586 ntBASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 Mico1.1-201ENST00000611698 204 ntBASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AC124312.6-202ENST00000623624 418 ntBASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 CASC19-221ENST00000641309 1382 ntBASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 AC131971.1-201ENST00000332881 1482 ntBASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.99□□□□□ -1.61
PTCHD3Q3KNS1 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 PANDAR-201ENST00000629595 1506 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 SCARNA15-201ENST00000607520 4325 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 HSPA8P18-201ENST00000439846 1928 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC011755.1-201ENST00000623763 2049 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 RNU6-1066P-201ENST00000363573 105 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 Y_RNA.311-201ENST00000365068 96 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 RNU6-1200P-201ENST00000384162 107 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AL161909.1-201ENST00000397390 712 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 HNRNPDP2-201ENST00000406475 478 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 RNU2-65P-201ENST00000410162 185 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 RN7SKP16-201ENST00000410180 299 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AL161449.1-201ENST00000414531 1199 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC007559.1-201ENST00000428736 355 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AL050321.1-201ENST00000432363 400 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 GTF3AP5-201ENST00000442645 697 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC092647.2-201ENST00000452998 253 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AL445669.2-201ENST00000454425 421 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 CCDC75P1-201ENST00000469247 791 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC008885.2-201ENST00000509506 930 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 Y_RNA.655-201ENST00000515919 96 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 FTH1P11-201ENST00000517577 551 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 HIGD1AP6-201ENST00000521833 279 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 MTCO1P49-201ENST00000523429 802 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 GTF2IP8-201ENST00000560687 584 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 MIR4646-201ENST00000580775 63 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 MIR4436B2-201ENST00000581415 91 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 MIR4436B1-201ENST00000583272 91 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AL137072.1-201ENST00000603444 466 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC018695.5-201ENST00000605872 315 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC135507.1-201ENST00000607214 561 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC131235.4-201ENST00000609288 620 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC004223.4-201ENST00000612426 332 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC243654.2-201ENST00000612843 443 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC073348.1-201ENST00000623002 331 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC099494.2-201ENST00000623371 978 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 AC116618.1-201ENST00000634617 774 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
PTCHD3Q3KNS1 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms